View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_high_8 (Length: 398)
Name: NF0927_high_8
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 11710137 - 11709744
Alignment:
| Q |
6 |
ctccaacaatatgacatacattttagtaatatgtgaccagtttgaaattccttcnnnnnnnnnnnnnnnnnn-cagtttgcaaagacaataaaccatgct |
104 |
Q |
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| T |
11710137 |
ctccaacaaaatgacatacattttagtaatatgtgaccagtttgaaattccttcaaaaaaaaaagcaaaaaaacagtttgcaaagacaataaaccatgct |
11710038 |
T |
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| Q |
105 |
aatctataaaggaagctcatgacaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagttta |
204 |
Q |
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| T |
11710037 |
aatctataaaggaagctcatgacaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagttta |
11709938 |
T |
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| Q |
205 |
ataatgatataaccactgatgataagttatttagtggaagtatgtaatggagaaaagggttcaagaacaaaacagacaggctcaaaacatcagaaatagg |
304 |
Q |
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| T |
11709937 |
ataatgatataaccactgatgataagttatttagtggaagtatgtaatggagaaaagggttcaagaacaaaacagacaggctcaaaacatcagaaatagg |
11709838 |
T |
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| Q |
305 |
caggaattgaaatagcctacctattaataaaaattgtgtagttatgagttatagatggatgaaaacccatcagagatccgaaagatacataaaa |
398 |
Q |
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| T |
11709837 |
caggtattgaaatagcctacctattaataaaaattgtgtagttatgagttatagatggatgaaaacccatcagagatccgaaagatacataaaa |
11709744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 11709398 - 11709278
Alignment:
| Q |
86 |
aaagacaataaaccatgctaatctataaaggaagctcatg-acaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggca |
184 |
Q |
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||||||||||| |||| |||| ||||||| |||||| || |||||||||||||| | || ||||| || |||||||| | ||||||||||| |||||| |
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| T |
11709398 |
aaagacaataagccatactaacctataaaagaagctaatatacaagtctaactgatgtcttttttaccttaacaaactttattgtgcaagttgcaaggca |
11709299 |
T |
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| Q |
185 |
actatcaagaagtaagtttaa |
205 |
Q |
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| T |
11709298 |
actaacaagaaataagtttaa |
11709278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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