View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_1 (Length: 841)
Name: NF0927_low_1
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_1 |
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| [»] scaffold0252 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 94 - 831
Target Start/End: Complemental strand, 40185516 - 40184784
Alignment:
| Q |
94 |
tcagaaagttcgaggaggcacttgaccttcttcgtttgcggtggtcatcccttaaatcatttgtgtagtatatttcaaagtttgggaccatggaggatgc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40185516 |
tcagaaagttcgaggaggcacttgaccttcttcgtttgcggtggtcatcccttaaatcatttgtgtagtatatttcgaagtttgggaccatggaggatgc |
40185417 |
T |
|
| Q |
194 |
tgcaaaattcctgaaggttttgagtaagaataactacccttgatctcataaagtttaccttcaaatttttgaatccttatttcaagaaggcagactttca |
293 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185416 |
tgcaaaattcctgaaagttttgagtaagaataactaccctt---ctcataaagtttaccttcaaatttttgaatccttatttcaagaaggcagactttca |
40185320 |
T |
|
| Q |
294 |
gaggccaaatatttgttgaacaagtgtcctcaccatatcagaaagcagtgaaatccgcggtttttt-ggttcagctgagagtctgaaggcccagactcag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40185319 |
gaggccaaatatttgttgaacaagtgtcctcaccatatcagaaagcagtgaaatccgcggtttttttggttcagctgagagtctgaaggcccagactcag |
40185220 |
T |
|
| Q |
393 |
atgaccgctacttgatccctattttaattattttcttagtatctatctcgtctttcatcatccagtttaataacttttatcaagctgttaggtggatttg |
492 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185219 |
atgaccgctacttgatccctattttagttattttcttagtatctatctcgtctttcatcatccagtttaataacttttatcaagctgttaggtggatttg |
40185120 |
T |
|
| Q |
493 |
tctttgcatttggaaaaccatcagtacatagtatatgatgtcacagttaactttattc---ttgaattggtaagaagtttcatgtatgaccagtaatgtt |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
40185119 |
tctttgcatttggaaaaccatcagtacatagtatatgatgt--cagttaactttattcttgttgaattggtaagaagttttatgtatgaccagtaatgtt |
40185022 |
T |
|
| Q |
590 |
atcattgataagtattttaaaaaagatgtacacaatcgagattttatgtttatgtaacgaataagcagctgtttctacatccatatgaaaaatatgctgg |
689 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185021 |
atcattgataagtattttaaaaaagatgtacacaatcgagattttatgtttatgtaacgaataagcagctgtttctacatccatatgaaaaatatgctg- |
40184923 |
T |
|
| Q |
690 |
ctagctagtatttacctcattggaataaatatgttgttattggagtcattctcaaaacatctgggatctctttcataccttgttcaagtttagtgtcttt |
789 |
Q |
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| T |
40184922 |
---gctagtatttaccacattggaataaatatgttgttattggagtcattctcaaaacatgtgggatctctttcataccttgttcaagtttagtgtcttt |
40184826 |
T |
|
| Q |
790 |
aataaattctcgtgattaatttatggacacttgggacctatg |
831 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40184825 |
aataaattctcgtgattaatttatggacacttgggacctatg |
40184784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 43436330 - 43436504
Alignment:
| Q |
163 |
atatttcaaagtttgggaccatggaggatgctgcaaaattcctgaaggttttgagtaagaataactacccttgatctcataaagtttaccttcaaatttt |
262 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||| || || ||||| ||| |||| |||||||||||||||||| |
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| T |
43436330 |
atatttcgaagtttgggaccatggaggatgctgcagaattcctgagggtgttgagtttaaaaaattaccc---atcccatacagtttaccttcaaatttt |
43436426 |
T |
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| Q |
263 |
tgaatccttatttcaagaaggcagactttcagaggccaaatatttgttgaacaagtgtcctcaccatatcagaaagca |
340 |
Q |
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| T |
43436427 |
tgaatccttatttcaagaaggtagactttcagaggccaaagatctattgtacaagtgtcctcaccatatcaggaagca |
43436504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 43427827 - 43427994
Alignment:
| Q |
162 |
tatatttcaaagtttgggaccatggaggatgctgcaaaattcctgaaggttttgagtaagaataactacccttgatctcataaagtttaccttcaaattt |
261 |
Q |
| |
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|||||||| |||||||||||| |||||||||||| |||||||||| | ||||||| || || ||||| |||||| | ||||||||| ||||||| |
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| T |
43427827 |
tatatttcgaagtttgggaccgtggaggatgctgtggaattcctgaaagcattgagtataaaaaattaccc---atctcaaacagtttacctccaaattt |
43427923 |
T |
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| Q |
262 |
ttgaatccttatttcaagaaggcagactttcagaggccaaatatttgttgaacaagtgtcctcaccatatc |
332 |
Q |
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| T |
43427924 |
ttgaatccttatttcaagaaggtagactttcagaggccaaagatctattgtacaggtgtcctcaccatatc |
43427994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 423 - 535
Target Start/End: Original strand, 43436601 - 43436708
Alignment:
| Q |
423 |
ttttcttagtatctatctcgtctttcatcatccagtttaataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacata |
522 |
Q |
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||||||||||||||||||| ||||| |||| || |||||||||| |||||||||| ||||||||| |||||||| |||||||||||| || | ||| |
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| T |
43436601 |
ttttcttagtatctatctcatctttaatcaacc-----aataacttttgtcaagctgttgggtggatttttctttgcacttggaaaaccattaggagata |
43436695 |
T |
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| Q |
523 |
gtatatgatgtca |
535 |
Q |
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|||||| ||||| |
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| T |
43436696 |
atatatggtgtca |
43436708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 43423238 - 43423294
Alignment:
| Q |
154 |
ttgtgtagtatatttcaaagtttgggaccatggaggatgctgcaaaattcctgaagg |
210 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
43423238 |
ttgtgcagtatgtttcaaagtttgggaccgtggaggatgctgagaaattcctgaagg |
43423294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 43438750 - 43438806
Alignment:
| Q |
154 |
ttgtgtagtatatttcaaagtttgggaccatggaggatgctgcaaaattcctgaagg |
210 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
43438750 |
ttgtgcagtatgtttcaaagtttgggaccgtggaggatgctgagaaattcctgaagg |
43438806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 21793 - 21967
Alignment:
| Q |
163 |
atatttcaaagtttgggaccatggaggatgctgcaaaattcctgaaggttttgagtaagaataactacccttgatctcataaagtttaccttcaaatttt |
262 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||| || || ||||| ||| |||| |||||||||||||||||| |
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| T |
21793 |
atatttcgaagtttgggaccatggaggatgctgcagaattcctgagggtgttgagtttaaaaaattaccc---atcccatacagtttaccttcaaatttt |
21889 |
T |
|
| Q |
263 |
tgaatccttatttcaagaaggcagactttcagaggccaaatatttgttgaacaagtgtcctcaccatatcagaaagca |
340 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||| || | ||| |||||||||||||||||||||| ||||| |
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| T |
21890 |
ttaatccttatttcaagaaggtagactttcagaggccaaagatctattgtacaagtgtcctcaccatatcaggaagca |
21967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 22099 - 22175
Alignment:
| Q |
459 |
ttaataacttttatcaagctgttaggtggatttgtctttgcatttggaaaaccatcagtacatagtatatgatgtca |
535 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||| ||||| |
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| T |
22099 |
ttaataacttttgtcaagctgttaggtggatttgtctttgcacttggaaaaccattaggacataatatatggtgtca |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 21709 - 21746
Alignment:
| Q |
94 |
tcagaaagttcgaggaggcacttgaccttcttcgtttg |
131 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||| |
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| T |
21709 |
tcagaaagtttgaggaggcactcgaccttcttcgtttg |
21746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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