View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0927_low_10 (Length: 446)

Name: NF0927_low_10
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0927_low_10
NF0927_low_10
[»] chr5 (5 HSPs)
chr5 (126-436)||(11709457-11709767)
chr5 (116-190)||(4787946-4788020)
chr5 (116-190)||(9446306-9446383)
chr5 (121-190)||(2541285-2541354)
chr5 (119-151)||(42217632-42217664)
[»] chr7 (5 HSPs)
chr7 (57-149)||(30900106-30900193)
chr7 (116-185)||(32612419-32612488)
chr7 (116-189)||(38921296-38921369)
chr7 (116-188)||(2898926-2898998)
chr7 (165-197)||(21174487-21174519)
[»] chr1 (1 HSPs)
chr1 (116-190)||(7347727-7347801)
[»] chr2 (2 HSPs)
chr2 (56-161)||(11530008-11530108)
chr2 (158-190)||(1813545-1813577)
[»] chr8 (3 HSPs)
chr8 (116-190)||(42822619-42822693)
chr8 (148-190)||(18899950-18899992)
chr8 (64-100)||(16900981-16901017)
[»] chr6 (3 HSPs)
chr6 (43-100)||(4886175-4886233)
chr6 (116-190)||(9074089-9074163)
chr6 (119-186)||(431018-431085)
[»] chr4 (2 HSPs)
chr4 (116-190)||(39305851-39305925)
chr4 (119-190)||(30617222-30617293)
[»] chr3 (3 HSPs)
chr3 (56-100)||(7277061-7277105)
chr3 (117-190)||(54838617-54838690)
chr3 (37-88)||(5033290-5033342)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 126 - 436
Target Start/End: Original strand, 11709457 - 11709767
Alignment:
Q  126 aaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaatgttattcttacgctatttattacaaagtattatg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11709457 aaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaacgttattcttacgctatttattacaaagtattatg 11709556  T
Q  226 aaatagtgcctatagtgccgctatagcaactactgtgtattggtacttgaacaaaccgccattttccgcaatctgcaattagtaacactgtgtaggctac 325  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11709557 aaatagtgcctatagcaccgctatagcaactactgtgtattggaacttgaacaaaccgccattttccgcaatctgcaattagtaacactgtgtaggctac 11709656  T
Q  326 aaggaacccacattgactatgcatttttccaacnnnnnnnncccttaagcttaaaaattgttttgtttgcagagacttaaaaattgtttttatgtatctt 425  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11709657 aaggaacccacattgactatgcatttttccaacttttttttcccttaagcttaaaaattgttttgtttgcagagacttaaaaatagtttttatgtatctt 11709756  T
Q  426 tcggatctctg 436  Q
    |||||||||||    
T  11709757 tcggatctctg 11709767  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 4787946 - 4788020
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||||||| || | |||||||||||| | || ||||||||||||||| | ||||||||||||||||||    
T  4787946 tatttagtacaaaatgttgtcaaatagtggctacacaggcactatagcactgttttatatcggaatttgaacaaa 4788020  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 9446306 - 9446383
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctata---gagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||||||||||||||||||| |||||||   | |   |||||||||||||||||| |||||||||| ||||    
T  9446306 tatttagtacaaaatattatgaaatagcggctatagtggtggtgctatagcactgttgtgtagcggaatttgagcaaa 9446383  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 2541285 - 2541354
Alignment:
Q  121 agtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||| | | || ||| | |||||||||||||||| |||||||||||| |||||||| ||||||    
T  2541285 agtacaaaatagtcttaattagcgtctatagagccactataacactgttgtgtagcggaatttcaacaaa 2541354  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 42217664 - 42217632
Alignment:
Q  119 ttagtacaaaatattatgaaatagtggctatag 151  Q
    ||||||||||||||| |||||||||||||||||    
T  42217664 ttagtacaaaatattgtgaaatagtggctatag 42217632  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 30900193 - 30900106
Alignment:
Q  57 atagtgatattgcatagcgaaatttgaacaaatctctattgttcagccgtactctattgtatttagtacaaaatattatgaaatagtggctat 149  Q
    |||||| |||||||||||| ||||||||| |||| ||||||||||||  ||| |     |||||||||||||||||| |||||||||||||||    
T  30900193 atagtgctattgcatagcggaatttgaacgaatcgctattgttcagcgatacac-----tatttagtacaaaatattgtgaaatagtggctat 30900106  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 32612488 - 32612419
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttga 185  Q
    |||||||||||||||||| |||| ||  |||||| | | | |||||||||||||||||| ||||||||||    
T  32612488 tatttagtacaaaatattgtgaagtaccggctatggtggcgctatagcactgttgtgtagcggaatttga 32612419  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 38921296 - 38921369
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaa 189  Q
    |||||||| ||||||||| |||| |||| |||| || | | |||||||| ||||||||| ||||||||||||||    
T  38921296 tatttagtgcaaaatattgtgaagtagtagctacagtggcgctatagcattgttgtgtagcggaatttgaacaa 38921369  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 2898926 - 2898998
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaaca 188  Q
    |||||| | ||||||||| ||||||||||||||||| | | ||| |||| |||| |||| ||| |||||||||    
T  2898926 tatttaatgcaaaatattgtgaaatagtggctatagcggccctacagcattgttatgtagcggtatttgaaca 2898998  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 21174487 - 21174519
Alignment:
Q  165 ctgttgtgtatcggaatttgaacaaatgttatt 197  Q
    |||||||||| ||||||||||||||||||||||    
T  21174487 ctgttgtgtagcggaatttgaacaaatgttatt 21174519  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 7347727 - 7347801
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    |||||||||||||||||| |||||||| |||||||||| | |||||| ||||||| |||  | ||||||||||||    
T  7347727 tatttagtacaaaatattgtgaaatagcggctatagaggcgctatagtactgttgcgtaatgtaatttgaacaaa 7347801  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 11530008 - 11530108
Alignment:
Q  56 tatagtgatattgcatagcgaaatttgaacaaatctctattgttcagccgtactctattgtatttagtacaaaatattatgaaatagtggctatagagcc 155  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||| ||  ||| |     ||||||||||| |||||| |||||||| |||||||| | |    
T  11530008 tatagtgttgttgcatagcgaaatttgaacaaatcactattgttctgcgatacac-----tatttagtacataatattgtgaaatagcggctatagtggc 11530102  T
Q  156 actata 161  Q
    ||||||    
T  11530103 actata 11530108  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 1813545 - 1813577
Alignment:
Q  158 tatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||||||||| |||||||||||||||    
T  1813545 tatagcactgttgtgtagcggaatttgaacaaa 1813577  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 42822619 - 42822693
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||| |||||||| | ||||||||||||||||| | | ||||||||||||||  ||  ||||||||||||||    
T  42822619 tatttaggacaaaatactgtgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaa 42822693  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 18899992 - 18899950
Alignment:
Q  148 atagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    |||||| || ||||||||||||||||| |||||||||||||||    
T  18899992 atagaggcaatatagcactgttgtgtagcggaatttgaacaaa 18899950  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 16901017 - 16900981
Alignment:
Q  64 tattgcatagcgaaatttgaacaaatctctattgttc 100  Q
    |||||||||||| |||||||||||||| |||||||||    
T  16901017 tattgcatagcggaatttgaacaaatcactattgttc 16900981  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 4886175 - 4886233
Alignment:
Q  43 tgttaaatagtg-ttatagtgatattgcatagcgaaatttgaacaaatctctattgttc 100  Q
    |||||||||||| |||||| | |||||||||| | ||||||||||||||||||||||||    
T  4886175 tgttaaatagtggttatagcgctattgcatagtggaatttgaacaaatctctattgttc 4886233  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 9074163 - 9074089
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    |||||| |||||||| |||| |||||| |||||||| | | ||||||||||||||| ||  ||||||||||||||    
T  9074163 tatttactacaaaatgttatcaaatagaggctatagcggcgctatagcactgttgtataatggaatttgaacaaa 9074089  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 431018 - 431085
Alignment:
Q  119 ttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaa 186  Q
    ||||||||||||||| | |||||| |||||||||  | |||||||||||||| ||| | |||||||||    
T  431018 ttagtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttgaa 431085  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 39305851 - 39305925
Alignment:
Q  116 tatttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||| |||||| ||||||||||||||||| | ||| |||||||||  | ||| | |||||||||||||    
T  39305851 tatttagtacagaatattgtgaaatagtggctatagcgacacaatagcactgccgcgtagcagaatttgaacaaa 39305925  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 30617293 - 30617222
Alignment:
Q  119 ttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    ||||||||||||||| |||||||||||| |||| |   |||||||| ||||| |||  ||||||||||||||    
T  30617293 ttagtacaaaatattgtgaaatagtggcaatagcgatgctatagcattgttgcgtagtggaatttgaacaaa 30617222  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 7277061 - 7277105
Alignment:
Q  56 tatagtgatattgcatagcgaaatttgaacaaatctctattgttc 100  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||    
T  7277061 tatagcgatattgcatagcggaatttgaacaaatcactattgttc 7277105  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 54838617 - 54838690
Alignment:
Q  117 atttagtacaaaatattatgaaatagtggctatagagccactatagcactgttgtgtatcggaatttgaacaaa 190  Q
    |||||||||||||| || | |||||||||||| |  ||| ||||||||||||||   | |||||||||||||||    
T  54838617 atttagtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaa 54838690  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 5033290 - 5033342
Alignment:
Q  37 cagtgttgttaaatagt-gttatagtgatattgcatagcgaaatttgaacaaa 88  Q
    ||||||||||||||||  | ||||| | |||||||||||||||||||||||||    
T  5033290 cagtgttgttaaatagaagctatagcgctattgcatagcgaaatttgaacaaa 5033342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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