View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_11 (Length: 436)
Name: NF0927_low_11
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 39516205 - 39516563
Alignment:
| Q |
23 |
atcatcattagtcttacgattaagaatagaccaacaaccataactaagtatgaaaaatacaaggaaacaaggacaaaagagggaagtgagccatctaata |
122 |
Q |
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| T |
39516205 |
atcatcattagtcttacaattaagaatagaccaacaaccataaccaagtatgaaaaatacaaggaaacaaggacaaaagagggaagtgagccatctaata |
39516304 |
T |
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| Q |
123 |
aaaacagctcctccacttacttgagacacttgtgagaaaacatgaaaatctatctagcatcatctattttcaactgagagaaaacagaatccgctgcact |
222 |
Q |
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| T |
39516305 |
aaaacagctcctccacttacttgagacacttgtgagaaaacatgaatatctatctagcatcatctattttcaactgagagaaaacagaatctgctgcact |
39516404 |
T |
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| Q |
223 |
atcagattcatcaataactctaccaatagacatagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaatt |
322 |
Q |
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| T |
39516405 |
atcagattcatcaataactctaccaatagacatagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaatt |
39516504 |
T |
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| Q |
323 |
gatacagaagcactgctagaactatcctcatgaggttctctatgtactgcacctctctg |
381 |
Q |
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| T |
39516505 |
gatacagaagcactgctagaactatcctcatgaggttctctatgtactgcacctctctg |
39516563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 162 - 381
Target Start/End: Original strand, 39509276 - 39509495
Alignment:
| Q |
162 |
acatgaaaatctatctagcatcatctattttcaactgagagaaaacagaatccgctgcactatcagattcatcaataactctaccaatagacatagacgt |
261 |
Q |
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| T |
39509276 |
acatgaaaatctatctggcatcatcaaggttcaactcagagaaaacagaatgcccagcactatcagattcatcaataaccctcaaaatagacatagacat |
39509375 |
T |
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| Q |
262 |
gtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatgaggttct |
361 |
Q |
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| T |
39509376 |
atcatccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgttagaactatcctcatgaggttct |
39509475 |
T |
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| Q |
362 |
ctatgtactgcacctctctg |
381 |
Q |
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| T |
39509476 |
ctatgtactgcacctctctg |
39509495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 39574284 - 39574392
Alignment:
| Q |
255 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatg |
354 |
Q |
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| T |
39574284 |
tagacgtgccatccacttcagtcggtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatg |
39574383 |
T |
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| Q |
355 |
aggttctct |
363 |
Q |
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| T |
39574384 |
cggttctct |
39574392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 39578817 - 39578925
Alignment:
| Q |
255 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatg |
354 |
Q |
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|||||||| ||||| ||| | |||| |||||||||||||| ||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
39578817 |
tagacgtgccatccactttagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatg |
39578916 |
T |
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| Q |
355 |
aggttctct |
363 |
Q |
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| T |
39578917 |
tggttctct |
39578925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 39542449 - 39542543
Alignment:
| Q |
255 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcc |
349 |
Q |
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| T |
39542449 |
tagacgtgccatccacttcagtcagtgcagacagagaaggtaaacgctgaacattaggcaattgaagtgacgcaaaagcactgctagaactatcc |
39542543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 39509197 - 39509245
Alignment:
| Q |
106 |
aagtgagccatctaataaaaacagctcctccacttacttgagacacttg |
154 |
Q |
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| T |
39509197 |
aagtcagccatctaataaaaacagctcctccacttacttgagacacttg |
39509245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 39509016 - 39509070
Alignment:
| Q |
62 |
ataactaagtatg-aaaaatacaaggaaacaaggacaaaagagggaagtgagcca |
115 |
Q |
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| T |
39509016 |
ataactaaggatgtaaaaatacaaggaaacaaggacaaaacagataagtgagcca |
39509070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 47067520 - 47067472
Alignment:
| Q |
388 |
cacattacttcatgagcatgagccacaccacttcaccaaatggggtggc |
436 |
Q |
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| T |
47067520 |
cacattacttcatgtgcatgagccacaccacttcaccaaatggggtggc |
47067472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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