View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0927_low_15 (Length: 363)
Name: NF0927_low_15
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 5179132 - 5178801
Alignment:
| Q |
1 |
ccagctaccaaatatagttgaggacgaaatttctgatctaaggagatgggtatcaagggactttcatgctgcaagccatgcacaagactcgaagacatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5179132 |
ccagctaccaaatatagttgaggacgaaatttctgatctaaggagatgggtatcaagggactttcatgctgcaagccatgcacaagactcgaagacatgt |
5179033 |
T |
|
| Q |
101 |
gtgctgtctgcaagttctagctcacaatcgagctgtgttacaagttcacaacaaacatcacctattgattctgcttccattgatacgatgaaaaggaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5179032 |
gtgctgtctgcaagttctagctcacaatcgagctgtgttacaagttcacaacaaacatcacctattgattctgcttccattgatacgatgaaaaggaagc |
5178933 |
T |
|
| Q |
201 |
atcaaatggtgaacttgaaaaagaatcagaaccaaacctttgggcaaagaacatctcaatatagaggtgtaacaaggtttgttttcatttgtcacattaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178932 |
atcaaatggtgaacttgaaaaagaatcagaaccaaacctttgggcaaagaacatctcagtatagaggtgtaacaaggtttgttttcatttgtcacattaa |
5178833 |
T |
|
| Q |
301 |
ttattaaaagtgtagttaaacattatatatat |
332 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
5178832 |
ttattaaaagtgtagttaaacattttatatat |
5178801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 40189339 - 40189378
Alignment:
| Q |
239 |
tttgggcaaagaacatctcaatatagaggtgtaacaaggt |
278 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
40189339 |
tttggtcaaagaacctctcaatatagaggtgtaacaaggt |
40189378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 650 times since January 2019
Visitors: 6705