View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_16 (Length: 349)
Name: NF0927_low_16
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 13139396 - 13139562
Alignment:
| Q |
84 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
183 |
Q |
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| T |
13139396 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
13139495 |
T |
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| Q |
184 |
gaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatggtg |
250 |
Q |
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| T |
13139496 |
gaagatattgatcattgcagcagtaataactagcttaccttgggggctagagcatttgttaatggtg |
13139562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 24558096 - 24558262
Alignment:
| Q |
84 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
183 |
Q |
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| T |
24558096 |
cagagaggttggtgctagaaataagattagctatagaggttctccaatgaatggttttgctgttgaatcttttttggttccttgcaaaccagattacatt |
24558195 |
T |
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| Q |
184 |
gaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatggtg |
250 |
Q |
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| T |
24558196 |
gaagatattgatcattgcagcagtaataactagcttaccttgggggctagagcatttgttaatggtg |
24558262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 34240193 - 34240273
Alignment:
| Q |
167 |
gcaaaccagattacattgaagatattgatcattgcagcagtaataactagcctaccttgggggctagagcatttgttaatg |
247 |
Q |
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| T |
34240193 |
gcaaaccaaatcacattgaagatattgatcatagcagcagtaataacaagttttccttgagagctagagcacttgttaatg |
34240273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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