View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_17 (Length: 345)
Name: NF0927_low_17
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 7386385 - 7386058
Alignment:
| Q |
16 |
tcacatttctctcttttattatattatcgttcgttgttcatcaaaaaagttaacttttgaccaattctttaaaaagttagaatgtcattagaatggaaaa |
115 |
Q |
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| T |
7386385 |
tcacatttctctcttttattatattatcgttcgttgttcatcaaaaaagttaatttttgaccaattctttaaaaagttagaatgtcattagaatggaaaa |
7386286 |
T |
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| Q |
116 |
tgagcttaataagttataatagataaaataaatatttacaaaattaaattaacatgatattgtgtcacgaacggtgtttggaggatcatgcacattagat |
215 |
Q |
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| T |
7386285 |
tgagcttaataagttataatagataaaacaaatatcaacaaaattaaagtaacatgatattgtgtcacgaacggtgtttgcaggatcatgcacattagat |
7386186 |
T |
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| Q |
216 |
caagagcaacacacaagtgaattggatataccatttttatttaaaactttaacacatttgggtttatattttgttcaaccttcactttttcaagcaatgt |
315 |
Q |
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| T |
7386185 |
caagagcaacacacaagtgaattggatataacatttttatttaaaactttaacacatttgggtttatattttgttcaaccttcactttttcaagaaatgt |
7386086 |
T |
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| Q |
316 |
atgggacttctaactcttacttgcatcaca |
345 |
Q |
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| T |
7386085 |
gtgggacttctaactc--acttgcatcaca |
7386058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 37660906 - 37660956
Alignment:
| Q |
279 |
ttatattttgttcaaccttcactttttcaagcaatgtatgggacttctaactc |
331 |
Q |
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| T |
37660906 |
ttatatgttgttcaaccttcactttttcaagcaa--tttgggacttctaactc |
37660956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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