View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_22 (Length: 298)
Name: NF0927_low_22
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 91 - 289
Target Start/End: Complemental strand, 29009630 - 29009432
Alignment:
| Q |
91 |
tttttattacataattccgttaaaaacgattttgaaaattatcagcgcgcgcatgaacctcactgtaactgccccacagacaagtttactctccataaca |
190 |
Q |
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| T |
29009630 |
tttttgttacataattccgttaaaaacgattttgaaaattatcagcgcgcgcatgaacctcactataactgcgccacagacaagtttactctccgtaaca |
29009531 |
T |
|
| Q |
191 |
gaaaacgaaaccaaaattctcatcactctgtataaaggcgcgaaaacccttctctctcattctccgatcactctcaccaccgtaactaacttctctctc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29009530 |
gaaaacgaaaccaaaattctcatcactctgtataaaggcgcgaaaacccttctctctcattctccgatcactctcaccacggtaactaacttctctctc |
29009432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 29009400 - 29009341
Alignment:
| Q |
239 |
cttctctctcattctccgatcactctcaccaccgtaactaacttctctctccaccgtaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009400 |
cttctctctcattctccgatcactctcaccaccgtaactaacttctctctccaccgtaac |
29009341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 29009441 - 29009391
Alignment:
| Q |
239 |
cttctctctcattctccgatcactctcaccaccgtaactaacttctctctc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009441 |
cttctctctcattctccgatcactctcaccaccgtaactaacttctctctc |
29009391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 7958655 - 7958693
Alignment:
| Q |
29 |
atgtgtaattttatttttagtagattaccacttcatcta |
67 |
Q |
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| T |
7958655 |
atgtgtaagtttatttttagtggattaccacttcatcta |
7958693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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