View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_23 (Length: 290)
Name: NF0927_low_23
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 26453517 - 26453706
Alignment:
| Q |
74 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcatagtgagatagtattgagagattcctcatatatattagagttttgc |
173 |
Q |
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| T |
26453517 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcataatgagatattattgagagattcctcatatatattagagttttgc |
26453616 |
T |
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| Q |
174 |
aaaactaaatatgcatataaggaaacttcataactataccaatatgtatggacaagactccatatatatcccatctcattcctcatattctt |
265 |
Q |
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| T |
26453617 |
aaaactaaatatgcatataaggaaacttcataactatacca--atgtatggacaagactccatatatatcccatctcattcctcattttctt |
26453706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 26453375 - 26453425
Alignment:
| Q |
29 |
aagaaagtcattaaaacaataagaatatcaaacataaaattcaatctaaat |
79 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26453375 |
aagaaagccattaaaacaataagaatatcaaacataaaattcaatcaaaat |
26453425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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