View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_24 (Length: 283)
Name: NF0927_low_24
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 46898168 - 46898270
Alignment:
| Q |
98 |
catggtacacaactctttccacttgatacctcttcttctttgctctcatactgacttgagcgtctcaacatccatatcggcagacactgttcatgctcgg |
197 |
Q |
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| T |
46898168 |
catggtacacaactctttccacttgatacctcttcctctttgctctcatactgacttgagcgtgtcaacatccatatcggcagacactgttcatgctcgg |
46898267 |
T |
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| Q |
198 |
ccc |
200 |
Q |
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||| |
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| T |
46898268 |
ccc |
46898270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 32715228 - 32715284
Alignment:
| Q |
101 |
ggtacacaactctttccacttgatacctcttcttctttgctctcatactgacttgag |
157 |
Q |
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||||||||| || ||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
32715228 |
ggtacacaattccttccacttgatacctctcactctttgctctcatactaacttgag |
32715284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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