View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0927_low_28 (Length: 281)

Name: NF0927_low_28
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0927_low_28
NF0927_low_28
[»] chr1 (9 HSPs)
chr1 (108-250)||(46358522-46358664)
chr1 (115-246)||(15373957-15374089)
chr1 (115-250)||(4530821-4530957)
chr1 (114-215)||(15374646-15374746)
chr1 (123-215)||(46357885-46357976)
chr1 (114-216)||(45597623-45597725)
chr1 (114-164)||(51610220-51610270)
chr1 (115-155)||(3788435-3788475)
chr1 (114-158)||(4626345-4626389)
[»] chr3 (8 HSPs)
chr3 (116-250)||(51492370-51492504)
chr3 (114-250)||(42146799-42146934)
chr3 (148-250)||(44385142-44385245)
chr3 (115-215)||(42147497-42147596)
chr3 (115-214)||(51491709-51491807)
chr3 (114-163)||(46580363-46580412)
chr3 (115-216)||(53714487-53714588)
chr3 (115-155)||(50306531-50306571)
[»] chr7 (6 HSPs)
chr7 (115-248)||(9379710-9379843)
chr7 (114-250)||(37693472-37693609)
chr7 (114-249)||(36661684-36661819)
chr7 (114-169)||(9378728-9378783)
chr7 (181-240)||(30915799-30915858)
chr7 (181-229)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (129-246)||(67907-68024)
scaffold0016 (115-215)||(67247-67346)
[»] chr2 (3 HSPs)
chr2 (115-250)||(6198816-6198951)
chr2 (115-230)||(5504344-5504458)
chr2 (115-155)||(26021919-26021959)
[»] chr8 (3 HSPs)
chr8 (115-250)||(511355-511491)
chr8 (63-109)||(44458876-44458922)
chr8 (63-109)||(44466409-44466455)
[»] chr4 (5 HSPs)
chr4 (114-240)||(5825333-5825457)
chr4 (180-240)||(20350402-20350462)
chr4 (114-165)||(55879793-55879844)
chr4 (114-168)||(49708720-49708774)
chr4 (189-233)||(6680273-6680317)
[»] chr5 (1 HSPs)
chr5 (115-155)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 46358664 - 46358522
Alignment:
Q  108 ctacggaggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcat 207  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46358664 ctacggaggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagttgatttctaatcctttaatcaaatgaagagcatagttttatcat 46358565  T
Q  208 agtctctcaccactagattttttcacactatctcccacaccct 250  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  46358564 agtctctcaccactaaattttttcacactatctcccacaccct 46358522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 15373957 - 15374089
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatgg-aaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 15374056  T
Q  214 tcaccactagattttttcacactatctcccaca 246  Q
    |||||||||||||||||||||||||||||||||    
T  15374057 tcaccactagattttttcacactatctcccaca 15374089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 4530957 - 4530821
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| |||| |||||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  215 caccactagatt-ttttcacactatctcccacaccct 250  Q
    |||||||||||| |||||||||||| |||||||||||    
T  4530857 caccactagatttttttcacactatatcccacaccct 4530821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 15374746 - 15374646
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | |||||||||||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctc 15374648  T
Q  214 tc 215  Q
    ||    
T  15374647 tc 15374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 46357885 - 46357976
Alignment:
Q  123 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 215  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| || || ||| || |||| |||| || | |||||||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccatgggcaagttgattt-tagtcattggattaaataaagaacacacttttatcatagtctctc 46357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 45597623 - 45597725
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    |||||||||||||||||||   |||||| | ||||||||||| | |||| |  ||| ||||  ||| ||||||  |||| |||||| |||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctc 45597722  T
Q  214 tca 216  Q
    |||    
T  45597723 tca 45597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 51610270 - 51610220
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagtt 164  Q
    |||||||||||||||||||  || | |||||||||||||||||| ||||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccat 155  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 4626389 - 4626345
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatgga 158  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||    
T  4626389 aggtggcatttagggtgggagagggaaaaaatttcccaccatgga 4626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 51492504 - 51492370
Alignment:
Q  116 gtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 215  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  216 accactagattttttcacactatctcccacaccct 250  Q
    |||||||||||||||||||||||||||||||||||    
T  51492404 accactagattttttcacactatctcccacaccct 51492370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 42146799 - 42146934
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42146799 aggtggcatttagggtgggatggg-aaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctc 42146897  T
Q  214 tcaccactagattttttcacactatctcccacaccct 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  42146898 tcaccactagattttttcacactatctcccacaccct 42146934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 44385245 - 44385142
Alignment:
Q  148 cccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatt-ttttcacactatctcccaca 246  Q
    ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||    
T  44385245 cccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctcaccactagatttttttcacactatatcccaca 44385146  T
Q  247 ccct 250  Q
    ||||    
T  44385145 ccct 44385142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 42147596 - 42147497
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 42147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 51491709 - 51491807
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 51491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 46580363 - 46580412
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagt 163  Q
    |||||||||||||||||||  || |||| ||||||| |||||||||||||    
T  46580363 aggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 53714487 - 53714588
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||   |||||| | ||||||||||||| |||| |  ||| |||   ||| ||||||  |||| |||||| ||||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  215 ca 216  Q
    ||    
T  53714587 ca 53714588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccat 155  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 9379843 - 9379710
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctct 9379744  T
Q  215 caccactagattttttcacactatctcccacacc 248  Q
    ||||||||||||||||||||||||||||||||||    
T  9379743 caccactagattttttcacactatctcccacacc 9379710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 37693609 - 37693472
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    |||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||    
T  37693609 aggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactc 37693510  T
Q  214 tcaccactagatt-ttttcacactatctcccacaccct 250  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  37693509 tcaccactagatttttttcacactatatcccacaccct 37693472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 36661684 - 36661819
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    |||||||||||||||||||   |||||| | ||||||||||||| |||||   ||| | | | ||  ||||| ||||||||||| |||||| |||| |||    
T  36661684 aggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagtatttttgtgaccattagatcaattgaagagcataattttattatagactc 36661783  T
Q  214 tcaccactagattttttcacactatctcccacaccc 249  Q
    |||||| |||||||||||||||||||| ||||||||    
T  36661784 tcaccattagattttttcacactatcttccacaccc 36661819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9378728 - 9378783
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgattt 169  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattt 9378783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 30915799 - 30915858
Alignment:
Q  181 atcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 240  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  30915799 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 30915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 30402836 - 30402788
Alignment:
Q  181 atcaaatgaagagcatagttttatcatagtctctcaccactagattttt 229  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| ||||||    
T  30402836 atcaaatgaagaccatacttttatcatactctctcaacactatattttt 30402788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 68024 - 67907
Alignment:
Q  129 tgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 228  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68024 tgggatggggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 67925  T
Q  229 ttcacactatctcccaca 246  Q
    ||||||||||||||||||    
T  67924 ttcacactatctcccaca 67907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 67247 - 67346
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 67345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 6198951 - 6198816
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||   |||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||||||||| |||||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  215 caccactagattttttcacactatctcccacaccct 250  Q
    |||||||||||||||| |||||||||||||||||||    
T  6198851 caccactagatttttttacactatctcccacaccct 6198816  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 5504344 - 5504458
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| |||||| | | | ||  |||||||||| | |||| |||||| ||||  | |    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaag-tgatttttgaccattagatcaaatgaataacataattttataatagatttt 5504442  T
Q  215 caccactagatttttt 230  Q
    || |||||||||||||    
T  5504443 caacactagatttttt 5504458  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 26021959 - 26021919
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccat 155  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 511491 - 511355
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 214  Q
    ||||||||||||||||||    ||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||||| |||||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  215 caccactagatt-ttttcacactatctcccacaccct 250  Q
    |||||||||||| ||||||||||||||||||||||||    
T  511391 caccactagatttttttcacactatctcccacaccct 511355  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 44458922 - 44458876
Alignment:
Q  63 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44458922 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44458876  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 44466455 - 44466409
Alignment:
Q  63 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44466455 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44466409  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 5825333 - 5825457
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 213  Q
    ||||||||||||||||||||  |||||| | ||||||||||| | ||||||  ||||||| | ||  ||||||||| || || | | ||||| || ||||    
T  5825333 aggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagtt-ttttctaaccattagatcaaatgaggaacacattattatcctactctc 5825431  T
Q  214 tcaccactagattttttcacactatct 240  Q
    ||| ||||||||||||| |||||||||    
T  5825432 tcaacactagatttttt-acactatct 5825457  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 20350402 - 20350462
Alignment:
Q  180 aatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 240  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  20350402 aatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatct 20350462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 55879793 - 55879844
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttg 165  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttg 55879844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 49708774 - 49708720
Alignment:
Q  114 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatt 168  Q
    |||||||||||||||||||   |||||| | ||||||||||||||||||| ||||    
T  49708774 aggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagatt 49708720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 6680317 - 6680273
Alignment:
Q  189 aagagcatagttttatcatagtctctcaccactagattttttcac 233  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||    
T  6680317 aagaacatagttttatcatagattctcaacactagattttttcac 6680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  115 ggtggcatttagggtgggatggggaaatattttcccaccat 155  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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