View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_29 (Length: 281)
Name: NF0927_low_29
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 13687573 - 13687335
Alignment:
| Q |
30 |
gatggtggtgttaatgacttggcattttcatttnnnnnnnntcagctatgtgttgtaacttgtggagatgataagttaattaaggtgacaaaagtttcta |
129 |
Q |
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| T |
13687573 |
gatggtggtgttaatgacttggcattttcatttaaaaaaaatcagctatgtgttgtaacttgtggagatgataagttaattaaggtgacaaaagtttcta |
13687474 |
T |
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| Q |
130 |
gtttataatagatcgagtgtagctatttgaatgtatttttaattattaatatattgagaatgatacatacaggtatggaatttggatggacataagatct |
229 |
Q |
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| T |
13687473 |
gtttataatagatcgtgtgtagctatttgaatgtatttttaattattaatatattgagaatgatacatacaggtatggaatttggatggacataagatct |
13687374 |
T |
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| Q |
230 |
tttgctttgatggtcatgtagcacctgtttattcggttc |
268 |
Q |
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| T |
13687373 |
ttagctttgatggtcatgtagcacctgtttattcggttc |
13687335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 13640558 - 13640385
Alignment:
| Q |
30 |
gatggtggtgttaatgacttggcattttcatttnnnnnnnntcagctatgtgttgtaacttgtggagatgataagttaattaaggtgacaaaagtttcta |
129 |
Q |
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| T |
13640558 |
gatggtgatgttaatgacttagcattttcatttaaaaaaaatcagctatgtgttgtaacttgtggagatgataagttaattaaggtgacaaaagtttcta |
13640459 |
T |
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| Q |
130 |
gtttataat-agatcgagtgtagctatttgaatgtatttttaattattaatatattgagaatgatacatacaggt |
203 |
Q |
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| T |
13640458 |
atttataataagattgtatgtagctacatgaatgtatttttaattattaa-atattgggaatgatacatacaggt |
13640385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 13631783 - 13631547
Alignment:
| Q |
30 |
gatggtggtgttaatgacttggcattttcatttnnnnnnnntcagctatgtgttgtaacttgtggagatgataagttaattaaggtgac--aaaagttt- |
126 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
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| T |
13631783 |
gatggtggtgttaatgacttggcattttcagttccaaaaaatcagctatgtgttgtaacttgtggagatgataagttaattaaggtggccgagaagtttc |
13631684 |
T |
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| Q |
127 |
ctagtttataatagatcgagtgtagctatttgaatgtatttttaattattaatatattgagaatgatacatacaggtatggaatttggatggacataaga |
226 |
Q |
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| T |
13631683 |
ctagtctataatatat----tgta-atatatgaatgtttctttaaatattaatattcgaagagtgatacatataggtatgggatttgaatggagataaga |
13631589 |
T |
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| Q |
227 |
tcttttgctttgatggtcatgtagcacctgtttattcggttc |
268 |
Q |
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| T |
13631588 |
tctttagctttgaaggccatgtagctcctgtttgttcagttc |
13631547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 27536516 - 27536605
Alignment:
| Q |
30 |
gatggtggtgttaatgacttggcattttcatttnnnnnnnntcagctatgtgttgtaacttgtggagatgataagttaattaaggtgaca |
119 |
Q |
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| T |
27536516 |
gatggtggtgttaatgacttggcattttcatttccaaaaaatcagctatgtgtcgtaagttgtggagatgataagttaattaaggtgaca |
27536605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 13639817 - 13639733
Alignment:
| Q |
34 |
gtggtgttaatgacttggcattttcatttnnnnnnnntcagctatgtgttgtaacttgtggagatgataagttaattaaggtgaca |
119 |
Q |
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| T |
13639817 |
gtggtgttaatgacttggaattt-catttccgaaaaatcagctatgcattgaatcttgtggagatgatatgttaattaaggtgaca |
13639733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 49957838 - 49957875
Alignment:
| Q |
82 |
ttgtaacttgtggagatgataagttaattaaggtgaca |
119 |
Q |
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| T |
49957838 |
ttgtaacttgtggggatgacaagttaattaaggtgaca |
49957875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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