View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0927_low_30 (Length: 278)

Name: NF0927_low_30
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0927_low_30
NF0927_low_30
[»] chr8 (9 HSPs)
chr8 (32-229)||(5313478-5313679)
chr8 (169-229)||(15125517-15125577)
chr8 (171-229)||(11832800-11832858)
chr8 (169-229)||(5283275-5283335)
chr8 (169-229)||(5306265-5306325)
chr8 (170-229)||(5290771-5290830)
chr8 (32-94)||(5306409-5306471)
chr8 (172-229)||(14950092-14950149)
chr8 (34-96)||(14949677-14949739)
[»] chr6 (1 HSPs)
chr6 (169-225)||(31526769-31526825)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 5313679 - 5313478
Alignment:
Q  32 gagaaacaaaggctagtgcgctaactacattaacctgatttccattatagtga----aatatcatgggaggaaaaatataagataccatcttcatgaata 127  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||    
T  5313679 gagaaacataggctagtgcgctacctacattaacctgatttccattatagtgagtgaaatatcatgggaggaaaaatataagacaccatcttcatgaata 5313580  T
Q  128 tgatgaatttggaattggaagaaacacaacctttcgagtttgtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatg 227  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313579 tgatgaatttggaattggaaaaaacacaacctgttgagtttgtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatg 5313480  T
Q  228 at 229  Q
    ||    
T  5313479 at 5313478  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 15125577 - 15125517
Alignment:
Q  169 gtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  15125577 gtaacttacagttcctgaaatcttagggatctctccaagtattgcatacaaaagagatgat 15125517  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 11832858 - 11832800
Alignment:
Q  171 aacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  11832858 aacttacagttcctgaaatctttggaatctctcctagtattgcatacaaaagagatgat 11832800  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 5283275 - 5283335
Alignment:
Q  169 gtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  5283275 gtaacttacagttcctgaaatctttggaatctctcctagtattgaatacaaaagagatgat 5283335  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 5306325 - 5306265
Alignment:
Q  169 gtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  5306325 gtaacttacagctccttaaatcttaggaatctctccaagtattgcatacaaaagtgatgat 5306265  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 5290771 - 5290830
Alignment:
Q  170 taacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||| ||| ||||||    
T  5290771 taacttacagttccttgaatcttgggaatctctccaagtattgcatacaaaagtgatgat 5290830  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 5306471 - 5306409
Alignment:
Q  32 gagaaacaaaggctagtgcgctaactacattaacctgatttccattatagtgaaatatcatgg 94  Q
    |||||||| |||| |||| || | ||||||||||||| ||||||||||||| |||||||||||    
T  5306471 gagaaacataggcaagtgtgccacctacattaacctgttttccattatagtaaaatatcatgg 5306409  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 14950092 - 14950149
Alignment:
Q  172 acttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgat 229  Q
    |||||||||||||  |||||| | ||||||||| ||||||||||||| ||||||||||    
T  14950092 acttacagttccttgaatcttggaaatctctccgagtattgcatacaaaagagatgat 14950149  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 14949677 - 14949739
Alignment:
Q  34 gaaacaaaggctagtgcgctaactacattaacctgatttccattatagtgaaatatcatggga 96  Q
    |||||| ||||||||| || | ||||||||||||| ||||||||||||  |||||| ||||||    
T  14949677 gaaacataggctagtgtgccacctacattaacctgttttccattatagcaaaatattatggga 14949739  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 31526769 - 31526825
Alignment:
Q  169 gtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagaga 225  Q
    ||||||||||||||||  ||| || ||||||||||| ||||||||||||||||||||    
T  31526769 gtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagaga 31526825  T

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