View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_37 (Length: 256)
Name: NF0927_low_37
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 31219062 - 31218930
Alignment:
| Q |
9 |
tactggtctatatccatatttctattaaattgttcacttacattaaatatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgtaac |
108 |
Q |
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| T |
31219062 |
tactggtctatatccatatttctattaaattgttcacttacattaaacatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgtaac |
31218963 |
T |
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| Q |
109 |
tataaaggggagagtagctgcactagagtgaag |
141 |
Q |
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| T |
31218962 |
tataaaggggagtgtagctgcactagagtgaag |
31218930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 31222942 - 31222783
Alignment:
| Q |
20 |
atccatatttctattaaattgttcacttacattaaatatgcaattaaggaagtttaaaaagcggaattttgttcatatatgcatgt-aactataaagggg |
118 |
Q |
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| T |
31222942 |
atccatatttctattaaattgttcacttaca-tgtacatgcaattatggaagttcaaaaagttgaattttgtccatatatgaatgtgtactataaagagg |
31222844 |
T |
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| Q |
119 |
agagtagctgcactagagtgaaggaagaacgttgaattcatgtacaacatcatgttgttcagtg |
182 |
Q |
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| T |
31222843 |
agtatagttgcactagagtga---tagaatgttgaattcctttacaacatcatgttgtttagtg |
31222783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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