View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0927_low_38 (Length: 256)

Name: NF0927_low_38
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0927_low_38
NF0927_low_38
[»] chr8 (5 HSPs)
chr8 (1-251)||(8700665-8700915)
chr8 (17-107)||(14382630-14382720)
chr8 (49-130)||(8693634-8693715)
chr8 (90-181)||(32056260-32056351)
chr8 (90-207)||(35495155-35495275)
[»] chr5 (3 HSPs)
chr5 (91-205)||(34250423-34250540)
chr5 (118-161)||(10161749-10161793)
chr5 (114-161)||(25548437-25548485)
[»] chr3 (3 HSPs)
chr3 (90-181)||(1441479-1441571)
chr3 (84-158)||(3845233-3845308)
chr3 (90-158)||(7262793-7262862)
[»] chr1 (3 HSPs)
chr1 (140-216)||(37522971-37523050)
chr1 (146-213)||(1003774-1003843)
chr1 (115-162)||(36529425-36529473)
[»] chr6 (4 HSPs)
chr6 (129-206)||(1485217-1485298)
chr6 (116-183)||(1499787-1499855)
chr6 (115-158)||(5724751-5724795)
chr6 (114-181)||(33136581-33136649)
[»] chr4 (1 HSPs)
chr4 (117-206)||(47596366-47596459)
[»] chr2 (1 HSPs)
chr2 (119-202)||(37420272-37420358)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 8700665 - 8700915
Alignment:
Q  1 tgaccaacaaaagtggattatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcattttggtttatgtttggtt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8700665 tgaccaaccaaagtggattatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcattttggtttatgtttggtt 8700764  T
Q  101 tcactattgatgtagccaaaattaattttagatgtgtagaattgatttgacatgtttgatttctctagagttgaattgattatctttagaattgattcta 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  8700765 tcactattgatgtagccaaaattaattttaaatgtgtagaattgatttgacatgtttggtttctctagagttgaattgattgtctctagaattgattcta 8700864  T
Q  201 cttgaagttagaagtttactttttaccatgaaatatattgttcatctcact 251  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  8700865 cttgaagttagaagtttacttattatcatgaaatatattgttcaactcact 8700915  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 14382720 - 14382630
Alignment:
Q  17 attatattaaattgttaatttaaacttaacggatcatctaaactaatccaaattaattttattcattttggtttatgtttggtttcactat 107  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||| ||||||||| ||||||    
T  14382720 attaaattaaattgttaatttaaacttaaccgatcatctaaactaatccaaattaattacaatcattttggtttgtgtttggttccactat 14382630  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 8693634 - 8693715
Alignment:
Q  49 atcatctaaactaatccaaattaattttattcattttggtttatgtttggtttcactattgatgtagccaaaattaatttta 130  Q
    |||||||||||||||||| || ||||||||||||||||||  ||||||||||||| | ||||   |||||||||| ||||||    
T  8693634 atcatctaaactaatccagataaattttattcattttggtgcatgtttggtttcatttttgaatgagccaaaatttatttta 8693715  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 32056260 - 32056351
Alignment:
Q  90 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgatttgacatgtttgatttctctagagttgaattgatt 181  Q
    |||||||||||||||| |||| | | |||||||| ||| |||||||||||||  ||||||||| ||||| || ||||| |||  ||||||||    
T  32056260 tatgtttggtttcacttttgaaggaaccaaaattgattctagatgtgtagaacagatttgacaagtttggttgctctatagtaaaattgatt 32056351  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 35495155 - 35495275
Alignment:
Q  90 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--ctt 186  Q
    ||||||||||| |||| |||  | | |||||||| ||| || | ||||||||||||||| |||||||||  |||||||| | | ||||| ||| |  ||     
T  35495155 tatgtttggttccacttttggagcacccaaaattgattctacaagtgtagaattgattttgacatgttttgtttctctaaattagaattaattttgcctc 35495254  T
Q  187 tagaattgattctacttgaag 207  Q
    |||||||||||||||||||||    
T  35495255 tagaattgattctacttgaag 35495275  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 34250540 - 34250423
Alignment:
Q  91 atgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--cttt 187  Q
    |||||||||| |||| |||| | ||  | |||| ||| |||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||  || |    
T  34250540 atgtttggttccacttttgaaggagttataattgattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctct 34250441  T
Q  188 agaattgattctacttga 205  Q
    ||||||||||||||||||    
T  34250440 agaattgattctacttga 34250423  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 10161749 - 10161793
Alignment:
Q  118 aaaattaattttagatgtgtagaattgat-ttgacatgtttgatt 161  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||    
T  10161749 aaaattgattctagatgtgtagaattgatcttgacatgtttgatt 10161793  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 25548437 - 25548485
Alignment:
Q  114 agccaaaattaattttagatgtgtagaattgatt-tgacatgtttgatt 161  Q
    |||||||||| ||| | ||||||||||||||||| ||||||||||||||    
T  25548437 agccaaaattgattgtggatgtgtagaattgattatgacatgtttgatt 25548485  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 1441571 - 1441479
Alignment:
Q  90 tatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattga-tttgacatgtttgatttctctagagttgaattgatt 181  Q
    ||||||||||| |||| |||  ||| ||||||||| || |||| |||||||||||| ||||||||||||| ||||| | |||| |||||||||    
T  1441571 tatgtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgatt 1441479  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 3845308 - 3845233
Alignment:
Q  84 ttggtttatgtttggtttcactattgatgtagccaaaattaattttagatgtgtagaattga-tttgacatgtttg 158  Q
    ||||| ||||||||||| |||| |||  ||| |||||||| ||| |||| |||||||||||| |||||||||||||    
T  3845308 ttggtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttg 3845233  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 7262793 - 7262862
Alignment:
Q  90 tatgtttggtttcactatt-gatgtagccaaaattaattttagatgtgtagaattgatt-tgacatgtttg 158  Q
    ||||||||||||||||||| ||||  ||||||||| |||||||| ||| |||||||||| |||||||||||    
T  7262793 tatgtttggtttcactattagatg-ggccaaaattgattttagaggtgaagaattgattctgacatgtttg 7262862  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 37523050 - 37522971
Alignment:
Q  140 aattgatt-tgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaagttagaagtt 216  Q
    |||||||| |||||||||||||| |||| |||| ||||||||| |  || | ||||||||||||||||||| ||||||||    
T  37523050 aattgattatgacatgtttgattgctctggagtagaattgattttttctctcgaattgattctacttgaagctagaagtt 37522971  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 1003774 - 1003843
Alignment:
Q  146 tttgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaagttagaa 213  Q
    ||||||||||||| || |||||||||  |||||||| |  ||| ||||||||||||| ||||||||||||    
T  1003774 tttgacatgtttggttcctctagagtataattgattgtgtcttaagaattgattctaattgaagttagaa 1003843  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 36529425 - 36529473
Alignment:
Q  115 gccaaaattaattttagatgtgtagaattga-tttgacatgtttgattt 162  Q
    ||||||||||||||||||  ||||||||| | |||||||||||||||||    
T  36529425 gccaaaattaattttagaaatgtagaattaattttgacatgtttgattt 36529473  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 1485298 - 1485217
Alignment:
Q  129 tagatgtgtagaattgatt--tgacatgtttgatttctctagagttgaattgattat--ctttagaattgattctacttgaa 206  Q
    |||| ||||||||||||||  ||||||||||| || |||| |||| ||||| ||| |  |||||||||||||||||||||||    
T  1485298 tagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttgaa 1485217  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 1499787 - 1499855
Alignment:
Q  116 ccaaaattaattttagatgtgtagaattgatt-tgacatgtttgatttctctagagttgaattgattat 183  Q
    |||||||||||| |  | |||||||||||||| || ||||||||||| || |||||| |||||||||||    
T  1499787 ccaaaattaattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 1499855  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 5724795 - 5724751
Alignment:
Q  115 gccaaaattaattttagatgtgtagaattgatt-tgacatgtttg 158  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||    
T  5724795 gccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 33136649 - 33136581
Alignment:
Q  114 agccaaaattaattttagatgtgtagaattga-tttgacatgtttgatttctctagagttgaattgatt 181  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||| || |||| ||||  ||||||||    
T  33136649 agccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatt 33136581  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 47596459 - 47596366
Alignment:
Q  117 caaaattaattttagatgtgtagaattgatt--tgacatgtttgatttctctagagttgaattga--ttatctttagaattgattctacttgaa 206  Q
    ||||||| |||||| | ||| ||||||||||  ||||||||||||||||||||||||  |||| |  |||| | |||| |||||||||||||||    
T  47596459 caaaattgattttaaaggtggagaattgattgttgacatgtttgatttctctagagtataattaattttatttatagagttgattctacttgaa 47596366  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 37420358 - 37420272
Alignment:
Q  119 aaattaattttagatgtgtagaattgattt-gacatgtttgatttctctagagttgaattgattat--ctttagaattgattctact 202  Q
    ||||| ||| |||| ||||||||||||||| ||||||||||  ||| ||||||| ||||||||| |  || ||||||||||||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

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