View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_39 (Length: 256)
Name: NF0927_low_39
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 39662201 - 39662388
Alignment:
| Q |
40 |
cttctacaatgacaaaactgaccatttcaacccttcttctcggaaacaatgttattttagaaagaaaaataaaatatgacatgactcctataaaacaaat |
139 |
Q |
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| T |
39662201 |
cttctacaatgacaaaattgaccatttcaacccttcttctcggaaacaatgttattttagaaagaaaaataaaatatgacatgactcctataaaacaaat |
39662300 |
T |
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| Q |
140 |
tctacgtgtatattaaagaagaggaatattgacaacaatagatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
227 |
Q |
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| T |
39662301 |
tctatgtgtatattaaagaagaggaatattgacaaaaatagatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
39662388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 39652788 - 39652836
Alignment:
| Q |
179 |
agatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
227 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39652788 |
agatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
39652836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 39673437 - 39673485
Alignment:
| Q |
179 |
agatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
227 |
Q |
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| T |
39673437 |
agatgccgagaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
39673485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 30048033 - 30048081
Alignment:
| Q |
179 |
agatgccgggaatgaggatagtctctgcatgcaatctgcaagtcaaaaa |
227 |
Q |
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||||| |||| ||||||||||||||| ||||||| |||||||||||||| |
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| T |
30048033 |
agatgtcgggcatgaggatagtctctacatgcaacctgcaagtcaaaaa |
30048081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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