View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_4 (Length: 517)
Name: NF0927_low_4
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 177 - 426
Target Start/End: Original strand, 31077932 - 31078181
Alignment:
| Q |
177 |
caactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgg |
276 |
Q |
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| T |
31077932 |
caactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgg |
31078031 |
T |
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| Q |
277 |
gaaagatacaacttcagctgcactcacgtggttcttttggttactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatca |
376 |
Q |
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| T |
31078032 |
gaaagatacaacttcagctgcactcacgtggttcttttggctactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatca |
31078131 |
T |
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| Q |
377 |
gaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtc |
426 |
Q |
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| T |
31078132 |
gaaatagttagttacgatgaggtgaaggatatggtttatactcatgcgtc |
31078181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 182 - 423
Target Start/End: Original strand, 31131963 - 31132204
Alignment:
| Q |
182 |
ttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaag |
281 |
Q |
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| T |
31131963 |
ttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattcttgctgggagag |
31132062 |
T |
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| Q |
282 |
atacaacttcagctgcactcacgtggttcttttggttactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatcagaaat |
381 |
Q |
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| T |
31132063 |
atacaacttcagctgcactcacgtggttctttttgttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgat |
31132162 |
T |
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| Q |
382 |
agttagttacgatgaggtgaaggatatggtttatactcatgc |
423 |
Q |
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| T |
31132163 |
agttagtaacgatgaggtgaagaatatggtttacactcatgc |
31132204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 182 - 424
Target Start/End: Original strand, 31127255 - 31127497
Alignment:
| Q |
182 |
ttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaag |
281 |
Q |
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| T |
31127255 |
ttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagag |
31127354 |
T |
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| Q |
282 |
atacaacttcagctgcactcacgtggttcttttggttactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatcagaaat |
381 |
Q |
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| T |
31127355 |
atacaacttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaac |
31127454 |
T |
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| Q |
382 |
agttagttacgatgaggtgaaggatatggtttatactcatgcg |
424 |
Q |
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| T |
31127455 |
ggttaattacaatgaggtgaaggatatggtttacactcatgcg |
31127497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 31077834 - 31077904
Alignment:
| Q |
79 |
catagggatcgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
149 |
Q |
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| T |
31077834 |
catagggatcgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
31077904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 31128854 - 31128902
Alignment:
| Q |
101 |
aaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
149 |
Q |
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| T |
31128854 |
aaagaagccgtcgttgaagtaagaggactcgccacaagaatcgttaggg |
31128902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 31127162 - 31127222
Alignment:
| Q |
89 |
gagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
149 |
Q |
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| T |
31127162 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcgccacaagaatcgttaggg |
31127222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 31131869 - 31131930
Alignment:
| Q |
88 |
cgagcgacgattgaaagaagccgtcgctgaagtaagaggacttgctacaagaatcgttaggg |
149 |
Q |
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| T |
31131869 |
cgagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccacaaaaattgttaggg |
31131930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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