View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0927_low_40 (Length: 255)

Name: NF0927_low_40
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0927_low_40
NF0927_low_40
[»] chr1 (38 HSPs)
chr1 (48-240)||(21790785-21790979)
chr1 (48-240)||(29858957-29859145)
chr1 (48-170)||(14886187-14886309)
chr1 (48-172)||(47052379-47052503)
chr1 (48-178)||(16960018-16960147)
chr1 (48-170)||(26897033-26897155)
chr1 (48-172)||(14886726-14886850)
chr1 (48-182)||(46284789-46284923)
chr1 (52-210)||(6690339-6690499)
chr1 (48-172)||(48302089-48302213)
chr1 (48-208)||(16959538-16959699)
chr1 (48-178)||(44233242-44233372)
chr1 (48-176)||(6690984-6691111)
chr1 (52-156)||(26896507-26896611)
chr1 (48-174)||(2271229-2271355)
chr1 (48-172)||(27651998-27652121)
chr1 (48-181)||(46285434-46285567)
chr1 (48-172)||(27651367-27651490)
chr1 (48-182)||(39848764-39848898)
chr1 (48-172)||(21791380-21791502)
chr1 (65-182)||(44234550-44234667)
chr1 (60-169)||(48301913-48302022)
chr1 (65-172)||(29859561-29859668)
chr1 (52-182)||(47374083-47374213)
chr1 (48-174)||(42986791-42986917)
chr1 (48-182)||(47374730-47374864)
chr1 (48-168)||(10716706-10716826)
chr1 (48-182)||(7011999-7012132)
chr1 (48-182)||(7012922-7013056)
chr1 (48-182)||(39847842-39847976)
chr1 (48-172)||(5216596-5216718)
chr1 (48-169)||(42986982-42987103)
chr1 (48-182)||(5496580-5496714)
chr1 (49-156)||(10716838-10716945)
chr1 (48-182)||(26212953-26213087)
chr1 (116-182)||(5497205-5497271)
chr1 (52-128)||(51445507-51445583)
chr1 (124-182)||(51446962-51447020)
[»] chr8 (20 HSPs)
chr8 (48-240)||(36731911-36732105)
chr8 (48-178)||(39861542-39861672)
chr8 (48-209)||(5882269-5882432)
chr8 (48-182)||(25128621-25128755)
chr8 (48-172)||(17450561-17450684)
chr8 (65-182)||(25191396-25191513)
chr8 (82-209)||(25129224-25129353)
chr8 (82-181)||(5881201-5881300)
chr8 (48-182)||(29361849-29361983)
chr8 (47-172)||(36731374-36731497)
chr8 (48-182)||(29266197-29266331)
chr8 (81-177)||(37437963-37438059)
chr8 (59-172)||(39861007-39861119)
chr8 (48-174)||(5332068-5332194)
chr8 (48-182)||(29267744-29267878)
chr8 (48-174)||(5330929-5331055)
chr8 (48-103)||(39130994-39131049)
chr8 (48-165)||(42986681-42986798)
chr8 (51-163)||(42987383-42987495)
chr8 (205-240)||(39861509-39861544)
[»] chr6 (11 HSPs)
chr6 (48-209)||(19653722-19653885)
chr6 (48-170)||(8992942-8993064)
chr6 (48-170)||(9017389-9017511)
chr6 (48-172)||(8993481-8993605)
chr6 (48-172)||(9017928-9018052)
chr6 (48-172)||(18649796-18649919)
chr6 (47-172)||(32907461-32907584)
chr6 (48-133)||(9280828-9280913)
chr6 (48-123)||(19651106-19651181)
chr6 (48-178)||(18153293-18153421)
chr6 (81-182)||(18154351-18154451)
[»] chr7 (30 HSPs)
chr7 (48-178)||(43334618-43334747)
chr7 (48-172)||(3474937-3475061)
chr7 (48-178)||(30469992-30470121)
chr7 (48-172)||(26774029-26774153)
chr7 (48-178)||(3163389-3163518)
chr7 (48-170)||(3475469-3475591)
chr7 (48-206)||(3162904-3163063)
chr7 (48-178)||(46428010-46428139)
chr7 (48-208)||(30469547-30469708)
chr7 (48-170)||(26774573-26774691)
chr7 (50-208)||(43334167-43334330)
chr7 (48-182)||(8487695-8487829)
chr7 (48-172)||(30659890-30660013)
chr7 (48-172)||(37422594-37422717)
chr7 (48-162)||(38816721-38816835)
chr7 (48-182)||(8513350-8513484)
chr7 (51-181)||(21866271-21866401)
chr7 (48-172)||(30660406-30660529)
chr7 (48-182)||(8487064-8487198)
chr7 (48-182)||(8512739-8512873)
chr7 (51-208)||(46427531-46427693)
chr7 (48-182)||(25245548-25245682)
chr7 (48-182)||(31178675-31178808)
chr7 (48-182)||(38059882-38060016)
chr7 (52-182)||(28451163-28451293)
chr7 (48-174)||(21865601-21865727)
chr7 (48-182)||(31179808-31179939)
chr7 (51-176)||(26076786-26076911)
chr7 (51-176)||(26100573-26100698)
chr7 (48-155)||(43742755-43742862)
[»] chr4 (18 HSPs)
chr4 (67-235)||(42883295-42883470)
chr4 (48-178)||(21825039-21825168)
chr4 (48-182)||(42882783-42882917)
chr4 (48-208)||(21824592-21824753)
chr4 (48-182)||(45920174-45920308)
chr4 (48-182)||(45919546-45919680)
chr4 (47-182)||(46618384-46618519)
chr4 (48-182)||(4158498-4158632)
chr4 (48-182)||(46619514-46619648)
chr4 (48-174)||(42058521-42058645)
chr4 (48-174)||(41696015-41696141)
chr4 (81-174)||(29212062-29212155)
chr4 (120-203)||(24534111-24534196)
chr4 (48-182)||(41695419-41695553)
chr4 (81-182)||(24377837-24377937)
chr4 (142-182)||(4157900-4157940)
chr4 (123-182)||(52363111-52363170)
chr4 (51-111)||(4157817-4157877)
[»] chr3 (24 HSPs)
chr3 (48-182)||(51827597-51827731)
chr3 (48-172)||(41710093-41710217)
chr3 (48-170)||(41709554-41709676)
chr3 (48-210)||(28908507-28908671)
chr3 (48-210)||(30834288-30834452)
chr3 (48-210)||(51829342-51829506)
chr3 (48-172)||(53948695-53948818)
chr3 (48-133)||(43400704-43400789)
chr3 (48-172)||(53949211-53949334)
chr3 (48-182)||(28907921-28908054)
chr3 (48-157)||(53948485-53948593)
chr3 (48-182)||(53949373-53949507)
chr3 (48-182)||(47169044-47169178)
chr3 (48-172)||(38798287-38798410)
chr3 (48-182)||(47167922-47168056)
chr3 (90-182)||(30833747-30833838)
chr3 (48-178)||(11238551-11238679)
chr3 (48-174)||(53949972-53950098)
chr3 (48-182)||(20202090-20202222)
chr3 (48-153)||(20200524-20200629)
chr3 (48-153)||(20202708-20202813)
chr3 (142-182)||(20199998-20200038)
chr3 (77-172)||(38798788-38798874)
chr3 (48-169)||(24485855-24485976)
[»] chr5 (9 HSPs)
chr5 (48-182)||(42519675-42519809)
chr5 (48-209)||(42520289-42520452)
chr5 (48-182)||(42521578-42521712)
chr5 (48-174)||(23206089-23206215)
chr5 (48-182)||(42520652-42520786)
chr5 (48-182)||(21147984-21148118)
chr5 (48-174)||(21145971-21146097)
chr5 (98-169)||(31218780-31218851)
chr5 (48-174)||(31219884-31220010)
[»] scaffold0155 (2 HSPs)
scaffold0155 (52-182)||(1668-1798)
scaffold0155 (48-207)||(1033-1191)
[»] chr2 (22 HSPs)
chr2 (48-182)||(121339-121473)
chr2 (48-178)||(19386330-19386459)
chr2 (48-208)||(19386778-19386939)
chr2 (48-181)||(122842-122975)
chr2 (48-172)||(20202685-20202808)
chr2 (48-181)||(4776282-4776415)
chr2 (59-209)||(38956050-38956201)
chr2 (48-172)||(8911734-8911857)
chr2 (49-172)||(8911202-8911323)
chr2 (48-182)||(39629401-39629535)
chr2 (48-172)||(20203197-20203320)
chr2 (48-182)||(42848752-42848886)
chr2 (48-182)||(42849385-42849519)
chr2 (81-182)||(39628805-39628906)
chr2 (91-182)||(4776896-4776987)
chr2 (59-178)||(44929019-44929138)
chr2 (52-182)||(2477242-2477372)
chr2 (52-174)||(2477851-2477973)
chr2 (48-182)||(13327779-13327913)
chr2 (48-182)||(13328698-13328832)
chr2 (48-182)||(38273586-38273720)
chr2 (48-165)||(44926676-44926794)
[»] scaffold0188 (1 HSPs)
scaffold0188 (48-182)||(25649-25783)
[»] scaffold0009 (2 HSPs)
scaffold0009 (48-182)||(105545-105679)
scaffold0009 (48-182)||(106176-106310)
[»] scaffold0301 (1 HSPs)
scaffold0301 (48-182)||(20765-20897)
[»] scaffold0853 (2 HSPs)
scaffold0853 (81-182)||(2211-2312)
scaffold0853 (48-182)||(650-779)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 21790785 - 21790979
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21790785 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 21790884  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgcactaatgattgccatttgatttctcccactat 240  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21790885 ttttagaaataattaattctttcttctcttggttaattacttaccattttcgttatattttgcaccaatgattgccatttgatttctcccactat 21790979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 29858957 - 29859145
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      |||||||||| ||||||||||    
T  29858957 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctcgcatcaattcattaaattctcaca------atcaaatgagtcaaattttaa 29859050  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgcactaatgattgccatttgatttctcccactat 240  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  29859051 ttttagaaataatttattctttcttctcttagttaattacttaccattttcgctatattttgcaccaatgattgccatttgatttctcccactat 29859145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 14886187 - 14886309
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||    
T  14886187 aatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctcacatgcttgatcaaattatctaaattttaa 14886286  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||||||||| |||||||||||||    
T  14886287 ttttagaaacaatttattctttc 14886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 47052379 - 47052503
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  47052379 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaa 47052478  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||| ||| |||||||||||||||    
T  47052479 ttttaaaaacaatttattctttctt 47052503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 16960147 - 16960018
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  16960147 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattcattaaatgctcacatgcttgatcaaattatccaaattttaa 16960048  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  16960047 ttttagaaacaattt-ttctttcttctcttg 16960018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 26897155 - 26897033
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | | |||||||||    
T  26897155 aatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcatatgcttgatcaaattatctaaattttaa 26897056  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||||||||| |||||||||||||    
T  26897055 ttttagaaacaatttattctttc 26897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 14886850 - 14886726
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||| ||||||| | |||||||||    
T  14886850 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgttcacatgcttgagcaaatgatctaaattttaa 14886751  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  14886750 ttttagaaacaatttattctttctt 14886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 46284789 - 46284923
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||| |||||||||||||||||||||||  |||||||||| ||||||||||||| || ||||||||||||||||||  ||||||||||    
T  46284789 aatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatgcttacatgcttgatcaaatgatgcaaattttaa 46284888  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  |||||||||||||||||||||    
T  46284889 ttttagaaataaaatattctttcttctcttggtta 46284923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 6690339 - 6690499
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    ||||| |||||| |||||||||||||||||||||||  ||||  |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  6690339 tgacatcaaatcctaaccattaatccaactttaatccgacgttgctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaattttaatttt 6690438  T
Q  152 agaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgcac 210  Q
    |||||||||||||| |||||| ||||||||  ||| || || |||| ||||||||||||||    
T  6690439 agaaataatttattatttcttttcttggttggatagttcccgtttttgttatattttgcac 6690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 48302213 - 48302089
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| | | | |||||||    
T  48302213 aatttgacaccaaaccataaccattaatccaactttaatctcacgtctctcatcaattcattaaatgctcacatgtttgatcaaattatctacattttaa 48302114  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  48302113 ttttagaaacaatttattctttctt 48302089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 16959538 - 16959699
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||| |||| ||||| | |||||||||||    
T  16959538 aatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcacatgtttgaacaaataatccaaattttaa 16959636  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgc 208  Q
    ||||||||||||||||||| ||||| ||||| |||  |||||||| ||||| |||||||||||    
T  16959637 ttttagaaataatttattccttcttttcttgattaattacttaccgttttcattatattttgc 16959699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 44233242 - 44233372
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||  |||| ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  44233242 aatttgacatcaaattctaacaattaatccaactttaatctgacgtctctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaattttaa 44233341  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||| |||||||||||| ||| ||||||||    
T  44233342 ttttaaaaataatttattatttattctcttg 44233372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 6691111 - 6690984
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  6691111 aatttgacaccaaatcataaccattaatccaactttaatccgatgtctctcaacaattcattaaatactcacatgtttgatcaaatgattcaaattttaa 6691012  T
Q  148 ttttagaaataatttattctttcttctct 176  Q
     |||||||||||  |||||||||||||||    
T  6691011 -tttagaaataaaatattctttcttctct 6690984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 26896507 - 26896611
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||    
T  26896507 tgacaccaaatcataactattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaatttt 26896606  T
Q  152 agaaa 156  Q
    |||||    
T  26896607 agaaa 26896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 2271355 - 2271229
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |||||||||||||||||||||||  ||||| ||||||||||||||| ||  |||||||||||||||||||| | ||| |||||    
T  2271355 aatttgacactaaatcctaaccattaatccaactttaatccgacgtccctcatcaattcattagatgttcacatgcttgatcaaatgatcaaaaatttaa 2271256  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||||||||||| |||||||||||||    
T  2271255 ttttagaaataatgtattctttcttct 2271229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 27652121 - 27651998
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||| ||||||||||| ||||||| | | |||||||||    
T  27652121 aatttgacaccaaatcataaccattaattcaactttaatccgacgtttctcatcaattcattaaatgctcacatgctt-atcaaattatctaaattttaa 27652023  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| ||||| |||||||||    
T  27652022 ttttagaaacaatttgttctttctt 27651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 46285567 - 46285434
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||||||| | |||   ||||   ||||||||||||||||| |||| |||||||||||||| | |||||||||||    
T  46285567 aatttgacaccaaatcctaaccattaatccaacgtaaattcgacgttgatcatcaattcattaaatgctcaaatgcttgatcaaattatccaaattttaa 46285468  T
Q  148 ttttagaaataatttattctttcttctcttggtt 181  Q
    ||||||||||||||||||||||||| ||| ||||    
T  46285467 ttttagaaataatttattctttcttttctgggtt 46285434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 27651367 - 27651490
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||| ||| ||||||| | | || ||||||    
T  27651367 aatttgacactaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatactt-atcaaattatctaatttttaa 27651465  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  27651466 ttttagaaacaatttattctttctt 27651490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 39848898 - 39848764
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| ||  |||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  39848898 aatttgacaccaaatcctagccattaatacagttttaatctaacggctctcataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 39848799  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  39848798 ttttagaaataatttattctttcttcttttggtta 39848764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 21791502 - 21791380
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| |||| ||||||  ||||||| | ||||||||||||||  ||||||||||  |||||| | ||||| |||||    
T  21791502 aatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattcattaaatgttcacatgctt--tcaaataatccaaaatttaa 21791405  T
Q  148 ttttagaaataatttattctttctt 172  Q
    |||||||||||||||||||||||||    
T  21791404 ttttagaaataatttattctttctt 21791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 44234667 - 44234550
Alignment:
Q  65 taaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttat 164  Q
    |||||||||||||||||||||| | |||| | |||| |||| |||||||  ||||||| |||||||||||| || |||||||||||||||||||||||||    
T  44234667 taaccattaatccaactttaatatgacgtttttcataaatttattaaatgatcacatgtttgatcaaatgatccgaattttaattttagaaataatttat 44234568  T
Q  165 tctttcttctcttggtta 182  Q
    | ||| ||||||||||||    
T  44234567 tattttttctcttggtta 44234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 48301913 - 48302022
Alignment:
Q  60 aatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataa 159  Q
    |||||||| |||||||  ||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||  ||    
T  48301913 aatcataatcattaattaaactttaatctgatgtctctcatcaattcgttaaatgctcacatgcttgatcaaatgatctaaattttaattttagaatcaa 48302012  T
Q  160 tttattcttt 169  Q
    ||||||||||    
T  48302013 tttattcttt 48302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 29859668 - 29859561
Alignment:
Q  65 taaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttat 164  Q
    |||||||| || || ||||||||  | ||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  29859668 taaccattcattcatctttaatccgatgtctcccatcaattcattaaatgctcacatgcatgatcaaatgagacaaattttaattttaaaaataatttat 29859569  T
Q  165 tctttctt 172  Q
    ||||||||    
T  29859568 tctttctt 29859561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 47374083 - 47374213
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    |||||||||||  || |||||||| ||  |||||||||||| ||  |||||||||||||| | ||||||||||||||||| ||| |||  ||||| ||||    
T  47374083 tgacaccaaattctagccattaatacagttttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttattttt 47374182  T
Q  152 agaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||| |||||||    
T  47374183 agaaataatttattctttcttcttttggtta 47374213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 42986791 - 42986917
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||  ||||||| |   |||||||||| | ||||||| |||||||||| | |||||||| |||||||||||| |||  ||||||    
T  42986791 aatttgacaccaaatcttagtcattaatactcatttaatctaatggctctcattaattcattaagtgctcacatgtttgatcaaatgatccaccttttaa 42986890  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||| |||||||||||||||||||||    
T  42986891 ttttaaaaataatttattctttcttct 42986917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 47374864 - 47374730
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| |||| || |||||||||| | ||||||||||||||||| |||  ||  |||||     
T  47374864 aatttgacaccaaatcctagccattaatactgttttaatctaacggctcttattaattcattaagtgctcacatgcttgatcaagtgacacatcttttat 47374765  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||||||||||||||||||||| |||||||    
T  47374764 ttttataaataatttattctttcttcttttggtta 47374730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 10716706 - 10716826
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||| |||||||||  ||| ||||||| | | |||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  10716706 aatttaacaccaaattctaatcattaatacgattttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 10716805  T
Q  148 ttttagaaataatttattctt 168  Q
    |||||||||||||||||||||    
T  10716806 ttttagaaataatttattctt 10716826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 7011999 - 7012132
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  7011999 aatttgacaccaaatcctagccattaattcgggtttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 7012098  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||| ||||||| |||||||    
T  7012099 ttttagaaataatttattc-ttcttcttttggtta 7012132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 7013056 - 7012922
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| |||  || || ||||| | | ||||||||||||||||| ||| |||  |||||     
T  7013056 aatttgacaccaaatcctagccattaatacggttttaatctaacggctccgataaactcattgagtgctcacatgcttgatcaagtgacccactttttat 7012957  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  7012956 ttttagaaataatttattctttcttcttttggtta 7012922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 39847842 - 39847976
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |  |||||||||||||||| ||| |||  |||||     
T  39847842 aatttgacaccaaatcctagtcattaatacggttttaatctaacggctctcataaactcattaagtgttcacatgcttgatcaagtgacccaccttttat 39847941  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||||||||||||||||||||| |||||||    
T  39847942 ttttaaaaataatttattctttcttcttttggtta 39847976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 5216596 - 5216718
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||| |||||||| ||||||||||| |||| ||||||  ||||||| | ||||||||||||||  ||||||||||  |||||| |  |||| |||||    
T  5216596 aatttgataccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattcattaaatgttcacatgctt--tcaaataattcaaaatttaa 5216693  T
Q  148 ttttagaaataatttattctttctt 172  Q
    |||||||||||||||||| ||||||    
T  5216694 ttttagaaataatttattatttctt 5216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 42987103 - 42986982
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||| |||||||||||  |  |||||||||| |  || |||||||||||||| |  |||||||||||||||| ||| |||  ||||||    
T  42987103 aatttgacatcaaatcctaaccattaatatagttttaatctaaaggttcacatcaattcattaagtgttcacatgcttgatcaagtgacccaccttttaa 42987004  T
Q  148 ttttagaaataatttattcttt 169  Q
    ||||||||||||||||||||||    
T  42987003 ttttagaaataatttattcttt 42986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 5496580 - 5496714
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| |   |||||| ||||| ||| |||||||||||||| | ||||||||| |||| || |||  ||  |||||     
T  5496580 aatttgacaccaaattctagccattaatacggttttaatataacggctcccatcaattcattaagtgctcacatgcctgattaagtgactcatcttttat 5496679  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  5496680 ttttagaaataatttattctttcttcttttggtta 5496714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 10716945 - 10716838
Alignment:
Q  49 atttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaat 148  Q
    ||||||||||||||| || |||||||| |   |||||||||||  ||| |||||||||||||| | ||||||||||||||||| ||| ||| |||||| |    
T  10716945 atttgacaccaaatcctagccattaatacctttttaatctaacagctcgcatcaattcattaagtgctcacatgcttgatcaagtgacccatattttatt 10716846  T
Q  149 tttagaaa 156  Q
    ||||||||    
T  10716845 tttagaaa 10716838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 26212953 - 26213087
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || ||||||||  |  ||||||| |||| |||| |||||||   ||| | |||||||  ||||| ||||||||||  ||||||    
T  26212953 aatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattttataagtgctcacatatttgattaaatgagccaccttttaa 26213052  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||| ||| |||||||||||||||| ||||    
T  26213053 ttttagaaacaatctattctttcttctcttagtta 26213087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 5497271 - 5497205
Alignment:
Q  116 tcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta 182  Q
    ||||||| |||||||| |||  ||  ||||| ||||||||||||||||||||||||||| |||||||    
T  5497271 tcacatgtttgatcaagtgactcatcttttatttttagaaataatttattctttcttcttttggtta 5497205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 51445507 - 51445583
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgat 128  Q
    |||||||||||| || ||||||||  || |||||||||||| || | |||||||| |||| | ||||||||||||||    
T  51445507 tgacaccaaatcttatccattaatataattttaatctaacggctttaatcaattcgttaagtgctcacatgcttgat 51445583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 51446962 - 51447020
Alignment:
Q  124 ttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||||||| ||  ||||||||||||||| ||| |||||||||||||||| ||||    
T  51446962 ttgattaaatgagtcaccttttaattttagaaacaatctattctttcttctcttagtta 51447020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 36732105 - 36731911
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732105 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 36732006  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgcactaatgattgccatttgatttctcccactat 240  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  36732005 ttttagaaataatttattctttcttctcttggttaattacttaccatttttgttatattttgcaccaatcattgccatttgatttctcccactat 36731911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 39861672 - 39861542
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39861672 aatttaacatcaaatcctaaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacgtgcttgatcaaatgagccaaattttaa 39861573  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    |||||||||||||||||||||||||||||||    
T  39861572 ttttagaaataatttattctttcttctcttg 39861542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 5882432 - 5882269
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |||||||||||||||| ||||||   |||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  5882432 aatttgacacaaaatcctaaccattaatccaacattaatccgccgttgctcatcaattcattaaatgctcacatgcttgatcaaatgatccaaattttaa 5882333  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgca 209  Q
    ||||| ||||||||||||||||||| ||||||||  ||| || || |||| |||||||||||||    
T  5882332 ttttaaaaataatttattctttcttttcttggttgaatagttcccgtttttgttatattttgca 5882269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 25128621 - 25128755
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||  ||| || |||||||| ||||  ||||||||||    
T  25128621 aatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatattcaaatacttgatcatatgatgcaaattttaa 25128720  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  |||||||||||||||||||||    
T  25128721 ttttagaaataaaatattctttcttctcttggtta 25128755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 17450561 - 17450684
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| | | || ||||||    
T  17450561 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgctt-atcaaattatctaatttttaa 17450659  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  17450660 ttttagaaacaatttattctttctt 17450684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 25191513 - 25191396
Alignment:
Q  65 taaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttat 164  Q
    |||||||||||||||||||||||  ||||| |||||||||||| |||||  |||||||||||||||| |||  |||||||||||||||||||||||||||    
T  25191513 taaccattaatccaactttaatccgacgtccctcatcaattcagtaaatgttcacatgcttgatcaactgattcaaattttaattttagaaataatttat 25191414  T
Q  165 tctttcttctcttggtta 182  Q
    ||||||||||||| ||||    
T  25191413 tctttcttctcttagtta 25191396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 25129353 - 25129224
Alignment:
Q  82 ttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtt 181  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||| ||||||||    
T  25129353 ttaatccaacgtctctcatcaattcattaaatgctcacatgtttgatgaaatgatccaaattttaattttagaaataatttattatttcttttcttggtt 25129254  T
Q  182 --atacttaccattttcgttatattttgca 209  Q
       || || ||||||| |||||||||||||    
T  25129253 gattagtttccatttttgttatattttgca 25129224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 5881201 - 5881300
Alignment:
Q  82 ttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtt 181  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||| ||||||||    
T  5881201 ttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttcttttcttggtt 5881300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 29361849 - 29361983
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||| ||| || |||||||| |   |||||||||||| ||| |||||||||||||| | || |||||||||||||| ||| |||  |||||     
T  29361849 aatttgacaccagatcctagccattaatacggttttaatctaacggctcccatcaattcattaagtgctaacatgcttgatcaagtgacccatcttttat 29361948  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  29361949 ttttagaaataatttattctttcttcttttggtta 29361983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 36731374 - 36731497
Alignment:
Q  47 taatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaatttta 146  Q
    ||||||||||||||||| ||||||||||| |||| ||||||  ||||||| ||||||||||||||||  ||| ||||||  |||||| | ||||| ||||    
T  36731374 taatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccatcaattcattaaatgttcatatgctt--tcaaataatccaaaattta 36731471  T
Q  147 attttagaaataatttattctttctt 172  Q
    |||||| |||||||||||||||||||    
T  36731472 attttaaaaataatttattctttctt 36731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 29266197 - 29266331
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||| |||| |||||| | | |||||||||||| ||| ||| || ||||||| |  | |||||||||||||||||| |||  |||||     
T  29266197 aatttgacatcaaatcctaactattaatacgattttaatctaacggctcccataaactcattaagtatttacatgcttgatcaaatgacccactttttat 29266296  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  29266297 ttttagaaataatttattctttcttcttttggtta 29266331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 37437963 - 37438059
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctctt 177  Q
    |||||||||||| ||| ||||||||||||| || |||||||  |||||||||| | |||  |||||||||||||||||||||||||||| |||||||    
T  37437963 tttaatctaacggctcccatcaattcattagatgctcacatatttgatcaaattatccatcttttaattttagaaataatttattcttttttctctt 37438059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 39861007 - 39861119
Alignment:
Q  59 aaatcataaccattaatccaact-ttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaat 157  Q
    ||||| ||||||||||| ||||  ||||||  ||||||| |||||||||||||||| |||||||||||  |||||| | ||||| ||||||||||| |||    
T  39861007 aaatcttaaccattaattcaaccattaatccgacgtctcccatcaattcattaaatgctcacatgctt--tcaaataatccaaaatttaattttagtaat 39861104  T
Q  158 aatttattctttctt 172  Q
    |||||||||||||||    
T  39861105 aatttattctttctt 39861119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 5332194 - 5332068
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || |||||||   ||||||||||||||||| |||  ||  |||||     
T  5332194 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagagctcacatgcttgatcaagtgactcaccttttat 5332095  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    |||||||||||||||||||||||||||    
T  5332094 ttttagaaataatttattctttcttct 5332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 29267878 - 29267744
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || ||||||||     ||||||||||||  |||||| || ||||||| | ||||||||||||||||| ||| | |  |||||     
T  29267878 aatttgacaccaaatcttagccattaatatggttttaatctaacgattctcataaactcattaagtgctcacatgcttgatcaagtgatctaccttttat 29267779  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    | ||||||||||||||||||||||||| |||||||    
T  29267778 tattagaaataatttattctttcttcttttggtta 29267744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 5330929 - 5331055
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  5330929 aatttgacaccaaattctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 5331028  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||||||||||||||  |||||||||    
T  5331029 ttttagaaataatttaaactttcttct 5331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 39131049 - 39130994
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  39131049 aatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaa 39130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 42986681 - 42986798
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||| ||||||||     |||||| ||| | ||||||| |||||||||| | ||| |||| |||||||| ||| |||  ||||||    
T  42986681 aatttgacaccaaatcatagccattaataatgttttaatttaatggctctcattaattcattaagtgctcgcatgtttgatcaagtgacccaccttttaa 42986780  T
Q  148 ttttagaaataatttatt 165  Q
    ||||| ||||||||||||    
T  42986781 ttttataaataatttatt 42986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 42987495 - 42987383
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattt 150  Q
    ||||||||||||| |||| ||||||  |  |||||||||| |  || |||||||||||||| | |||| |||||||||||| ||| |||  |||||||||    
T  42987495 ttgacaccaaatcctaactattaatatagttttaatctaaaggttcacatcaattcattaagtgctcatatgcttgatcaagtgacccaccttttaattt 42987396  T
Q  151 tagaaataattta 163  Q
    || ||||||||||    
T  42987395 taaaaataattta 42987383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 39861544 - 39861509
Alignment:
Q  205 ttgcactaatgattgccatttgatttctcccactat 240  Q
    |||||| |||||||||||||||||||||||||||||    
T  39861544 ttgcaccaatgattgccatttgatttctcccactat 39861509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 19653885 - 19653722
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| || ||||||||| |||||||||||    
T  19653885 aatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctcatatgtttaatcaaatgatccaaattttaa 19653786  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgca 209  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  19653785 ttttagaaataatttattctttcttctcttggttaattacttaccattgtcgttatattttgca 19653722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 8992942 - 8993064
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||    
T  8992942 aatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacatgcttgatcaaattatctaaattttaa 8993041  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||||||||| |||||||||||||    
T  8993042 ttttagaaacaatttattctttc 8993064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 9017389 - 9017511
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||    
T  9017389 aatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacatgcttgatcaaattatctaaattttaa 9017488  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||||||||| |||||||||||||    
T  9017489 ttttagaaacaatttattctttc 9017511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 8993605 - 8993481
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||| | |||||||||    
T  8993605 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattctttaaatgctcacatgtttgatcaaatgatctaaattttaa 8993506  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  8993505 ttttagaaacaatttattctttctt 8993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 9018052 - 9017928
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||| |||||||| |||||||||||| | |||||||||    
T  9018052 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattctttaaatgctcacatgtttgatcaaatgatctaaattttaa 9017953  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  9017952 ttttagaaacaatttattctttctt 9017928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 18649919 - 18649796
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||| ||||||||||| | ||||| | | |||||||||    
T  18649919 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcacatgctt-aacaaattatctaaattttaa 18649821  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  18649820 ttttagaaacaatttattctttctt 18649796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 32907461 - 32907584
Alignment:
Q  47 taatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaatttta 146  Q
    ||||||||||||||||| ||||||||||| |||| ||||||| ||||||| |||||||||||||||  |||||||||||  |||||| | ||||| ||||    
T  32907461 taatttgacaccaaatcttaaccattaattcaaccttaatctgacgtctcccatcaattcattaaaggctcacatgctt--tcaaataatccaaaattta 32907558  T
Q  147 attttagaaataatttattctttctt 172  Q
    ||||||||||||||||||||||||||    
T  32907559 attttagaaataatttattctttctt 32907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 9280913 - 9280828
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaat 133  Q
    ||||||||||||||||  || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  9280913 aatttgacaccaaatccaaatcattaatccaactttaatctaaagtctctcatcaatttattaaattctcacatgcttgatcaaat 9280828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 19651106 - 19651181
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgc 123  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  19651106 aatttgacaccaaatcctaatcattaatccaactttaatctgacgtctctcattaattcattaaatgctcacatgc 19651181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 18153293 - 18153421
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||  |  ||||||||||||  || ||| ||||||||||    ||||||||||  ||||||||   |  ||||||    
T  18153293 aatttgacaccaaatcctaaccattaatatagttttaatctaacggttcgcataaattcattaagcgttcacatgctt--tcaaatgatataccttttaa 18153390  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||||| | |||||||||||||||||    
T  18153391 ttttagaaatactatattctttcttctcttg 18153421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 18154451 - 18154351
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggt 180  Q
    ||||||||||||  |  |||||||||||||| | |||||||| ||| |||||| | | |  ||||||||| ||||||||||| || ||||||||||||||    
T  18154451 tttaatctaacggtttccatcaattcattaagtgctcacatgtttggtcaaataatcaaccttttaattt-agaaataattttttttttcttctcttggt 18154353  T
Q  181 ta 182  Q
    ||    
T  18154352 ta 18154351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 43334747 - 43334618
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  43334747 aatttgacaccaaatcataaccattaattcaactttaatctaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaattttaa 43334648  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  43334647 ttttagaaacaattt-ttctttcttctcttg 43334618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 3474937 - 3475061
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  3474937 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaa 3475036  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  3475037 ttttagaaacaatttattctttctt 3475061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 30470121 - 30469992
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  30470121 aatttgacaccaaatcataaccattaattcaactttaatcaaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaattttaa 30470022  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  30470021 ttttagaaacaattt-ttctttcttctcttg 30469992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 26774029 - 26774153
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||    
T  26774029 aatttgacactaaatcataaccattaattcaactttaatccaacgtctctcgtcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaa 26774128  T
Q  148 ttttagaaataatttattctttctt 172  Q
    |||||||||||||||||||||||||    
T  26774129 ttttagaaataatttattctttctt 26774153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 3163518 - 3163389
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  3163518 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattcattaaatgctcacatgcttgattaaatgatccaaattttaa 3163419  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  3163418 ttttagaaacaattt-ttctttcttctcttg 3163389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 3475591 - 3475469
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||    
T  3475591 aatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcacatgcttgatcaaattatctaaattttaa 3475492  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||| ||||| |||||||||||||    
T  3475491 tttaagaaacaatttattctttc 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 3162904 - 3163063
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| | |||||||||||    
T  3162904 aatttgacaccaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaa 3163002  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatatttt 206  Q
    ||||||||||||||||||| ||||| ||||| |||  |||||||| ||||| |||||||||    
T  3163003 ttttagaaataatttattccttcttttcttgattaattacttaccgttttcattatatttt 3163063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 46428139 - 46428010
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  46428139 aatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaa 46428040  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  46428039 ttttagaaacaattt-ttctttcttctcttg 46428010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 30469547 - 30469708
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||||| ||||||| | |||||||||||||| ||||||||| ||||||||||||| ||||| | |||||||||||    
T  30469547 aatttgacaccaaatcctaaccattaatcca-ctttaatttgacgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaa 30469645  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgc 208  Q
    ||||||||||||||||||  ||||| ||||| |||  |||||||| ||||| |||||||||||    
T  30469646 ttttagaaataatttatttcttcttttcttgattaattacttaccgttttcattatattttgc 30469708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 26774691 - 26774573
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    ||||||||||| | | |||||||||    
T  26774691 aatttgacatcaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatgctca----cttgatcaaattatctaaattttaa 26774596  T
Q  148 ttttagaaataatttattctttc 170  Q
    |||||||||||||||||||||||    
T  26774595 ttttagaaataatttattctttc 26774573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 43334167 - 43334330
Alignment:
Q  50 tttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatt 149  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||| | |||||||||||||    
T  43334167 tttgacatcaaatcataaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcacatgcctgaacaaataatccaaattttaatt 43334265  T
Q  150 ttagaaataatttattctttcttctcttggtta------tacttaccattttcgttatattttgc 208  Q
    ||||||||||||||||| ||||| ||||| |||      |||||||| ||||| |||||||||||    
T  43334266 ttagaaataatttattccttcttttcttgattaattaattacttaccgttttcattatattttgc 43334330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 8487829 - 8487695
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| ||  |||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  8487829 aatttgacaccaaatcctagccattaatacagttttaatctaacggctctcatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 8487730  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  8487729 ttttagaaataatttattctttcttcttttggtta 8487695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 30659890 - 30660013
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||| ||||||| ||||||| | | || ||||||    
T  30659890 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcgcatgctt-atcaaattatctaatttttaa 30659988  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  30659989 ttttagaaacaatttattctttctt 30660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 37422594 - 37422717
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| | | || ||||||    
T  37422594 aatttgacatcaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgctt-atcaaattatctaatttttaa 37422692  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  37422693 ttttagaaacaatttattctttctt 37422717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 38816721 - 38816835
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||| | | |||||||||    
T  38816721 aatttgacaccaaatcataactattaatctaactttaatctgatgtctctcatcaattcatcaaatgctcacatgcttgatcaaattatctaaattttaa 38816820  T
Q  148 ttttagaaataattt 162  Q
    ||||||||| |||||    
T  38816821 ttttagaaacaattt 38816835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 8513484 - 8513350
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || ||| |||| ||  |||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  8513484 aatttgacaccaaatcctagccaataatacagttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 8513385  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  8513384 ttttagaaataatttattctttcttcttttggtta 8513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 21866401 - 21866271
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattt 150  Q
    ||||||| ||||| ||||||||||| ||  |||||||||| || ||||||||||||||||| | |||||||| |||||||||||| |||  |||||||||    
T  21866401 ttgacacaaaatcctaaccattaatacagttttaatctaatgtttctcatcaattcattaagtgctcacatgtttgatcaaatgacccaccttttaattt 21866302  T
Q  151 tagaaataatttattctttcttctcttggtt 181  Q
    || ||||||||||||||||||||| ||||||    
T  21866301 taaaaataatttattctttcttcttttggtt 21866271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 30660529 - 30660406
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||| ||| ||||||| | ||||| | | |||||||||    
T  30660529 aatttgagaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcccatgctt-aacaaattatctaaattttaa 30660431  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  30660430 ttttagaaacaatttattctttctt 30660406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 8487064 - 8487198
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |    ||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  8487064 aatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 8487163  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  8487164 ttttagaaataatttattctttgttcttttggtta 8487198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 8512739 - 8512873
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |    ||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  8512739 aatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 8512838  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  8512839 ttttagaaataatttattctttattcttttggtta 8512873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 46427531 - 46427693
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattt 150  Q
    ||||||||||||  |||| ||||||||| ||||||| | | |||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||||||||    
T  46427531 ttgacaccaaattctaactattaatcca-ctttaatatgatgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaattt 46427629  T
Q  151 tagaaataatttatt----ctttcttctcttggtta--tacttaccattttcgttatattttgc 208  Q
    |||||||||||||||    | ||||| ||||| |||  |||||||| ||||| |||||||||||    
T  46427630 tagaaataatttatttattccttcttttcttgattaattacttaccgttttcattatattttgc 46427693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 25245682 - 25245548
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||| ||||||||||| || |||||||| |   |||||||||| | ||||||| |||||||||| | |||||||| |||||||| ||| |||  ||||||    
T  25245682 aattagacaccaaatcttagccattaatactgttttaatctaatgactctcattaattcattaagtgctcacatgtttgatcaagtgatccaccttttaa 25245583  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  25245582 ttttagaaataatttattctttcttcttttggtta 25245548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 31178675 - 31178808
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| ||  |||||||||||| ||| ||| || ||||||||| ||||||||||||||||| ||| |||  |||||     
T  31178675 aatttgacaccaaatcctagccattaatacagttttaatctaacggctcccataaactcattaaatactcacatgcttgatcaagtgacccaccttttat 31178774  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||| |||||||||||||| |||||||    
T  31178775 ttttagaaataa-ttattctttcttcttttggtta 31178808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 38059882 - 38060016
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  38059882 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 38059981  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  38059982 ttttagaaataatttattctttcttcttttggtta 38060016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 28451163 - 28451293
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    |||||||||||| || |||||||| |   |||||||||||| |||||||||||||||||| | ||||||| ||||||||| ||| | |  ||||| ||||    
T  28451163 tgacaccaaatcctagccattaatacggttttaatctaacggctctcatcaattcattaagtactcacatacttgatcaagtgaccaatcttttattttt 28451262  T
Q  152 agaaataatttattctttcttctcttggtta 182  Q
    |||||||||| |||||||||||| |||||||    
T  28451263 agaaataattcattctttcttcttttggtta 28451293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 21865601 - 21865727
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  |||||||| ||  |  ||||||| || |  || |||||||||||||| | |||||||  |||||||| ||| |||  ||||||    
T  21865601 aatttgacaccaaattttaaccattcatatagttttaatcaaaaggttcacatcaattcattaagtgctcacatttttgatcaagtgacccaccttttaa 21865700  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||| |||||||||||||||||||||    
T  21865701 ttttaaaaataatttattctttcttct 21865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 31179939 - 31179808
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||| | ||  |||||||||||| ||| ||| || ||||||| | ||| ||||||| || || ||| |||  |||||     
T  31179939 aatttgacaccaaatcttaaccatta-tacagttttaatctaacggctcccataaactcattaagtgctcgcatgctt-at-aagtgacccaccttttat 31179843  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  31179842 ttttagaaataatttattctttcttcttttggtta 31179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 26076911 - 26076786
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattt 150  Q
    ||||||||||||  | |||| |||| ||||||||||| |||||| ||  | |||||||| |   ||||  ||||||||||||||| ||| ||| || |||    
T  26076911 ttgacaccaaattctgaccactaatacaactttaatccaacgtcactttttaattcattgatcgctcatgtgcttgatcaaatgacccacattgtacttt 26076812  T
Q  151 tagaaataatttattctttcttctct 176  Q
    ||||||| ||||||||  ||||||||    
T  26076811 tagaaatgatttattccatcttctct 26076786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 26100698 - 26100573
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattt 150  Q
    ||||||||||||  | |||| |||| ||||||||||| |||||| ||  | |||||||| |   ||||  ||||||||||||||| ||| ||| || |||    
T  26100698 ttgacaccaaattctgaccactaatacaactttaatccaacgtcactttttaattcattgatcgctcatgtgcttgatcaaatgacccacattgtacttt 26100599  T
Q  151 tagaaataatttattctttcttctct 176  Q
    ||||||| ||||||||  ||||||||    
T  26100598 tagaaatgatttattccatcttctct 26100573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 43742755 - 43742862
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||  || | |||||| ||  ||||||||||||  || |||| | ||||||||| ||||||||||| ||||||| | ||| |||||||    
T  43742755 aatttgacatcaaattctagctattaatacagttttaatctaacggttcccatcgactcattaaatgctcacatgcttaatcaaattatccatattttaa 43742854  T
Q  148 ttttagaa 155  Q
    | ||||||    
T  43742855 tattagaa 43742862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 42883470 - 42883295
Alignment:
Q  67 accattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattc 166  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  42883470 accattaatccaactttaatctgacgtccctcatcaattcattaaatgttcacatgcttgatcaaatgattcaaattttaattttataaataatttattc 42883371  T
Q  167 tttcttctcttggtta--tacttaccattttcgttatattttgcacta-----atgattgccatttgatttctccc 235  Q
    ||||||||||| ||||  || |||||||||||||||||||||||| ||     |||||||||||||||||| ||||    
T  42883370 tttcttctcttagttaactatttaccattttcgttatattttgcattaggaagatgattgccatttgatttttccc 42883295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 21825168 - 21825039
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  21825168 aatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaattttaa 21825069  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  21825068 ttttagaaacaattt-ttctttcttctcttg 21825039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 42882783 - 42882917
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  || ||||| ||||||||||| | ||| |||||    
T  42882783 aatttgacaccaaatcataaccattaatccaattttaatctaacgtccctcatcaattcattaaatgttcccatgcctgatcaaatgatcaaaaatttaa 42882882  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||| |||||||| |||||||    
T  42882883 ttttagaaataatttattttttcttctattggtta 42882917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 21824592 - 21824753
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| | |||||||||||    
T  21824592 aatttgacaccaaattctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaa 21824690  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgc 208  Q
    ||||||||||||||||||| ||||| ||||| |||  |||||||  ||||| |||||||||||    
T  21824691 ttttagaaataatttattccttcttttcttgattaattacttactgttttcattatattttgc 21824753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 45920308 - 45920174
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| ||  |||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  45920308 aatttgacaccaaattctagccattaatacagttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 45920209  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  45920208 ttttagaaataatttattctttcttcttttggtta 45920174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 45919546 - 45919680
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||| ||  ||||||| |   |||||||||||| |||||||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  45919546 aatttgacatcaaatcctagtcattaatacggttttaatctaacggctctcatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttat 45919645  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  45919646 ttttagaaataatttattctttcttcttttggtta 45919680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 46618384 - 46618519
Alignment:
Q  47 taatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaatttta 146  Q
    |||||||||| |||||| || |||||||| |   ||||||||||||  |||||| || ||||||| | |||||||| |||||||| ||| ||| ||||||    
T  46618384 taatttgacatcaaatcctagccattaatacggttttaatctaacggttctcataaactcattaagtgctcacatgtttgatcaagtgatccacatttta 46618483  T
Q  147 attttagaaataatttattctttcttctcttggtta 182  Q
     ||||||||||||||||||||||||||| |||||||    
T  46618484 tttttagaaataatttattctttcttcttttggtta 46618519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 4158632 - 4158498
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| ||| ||||||||||||  |  ||| |||| ||||| | |||||||| ||||||||||||   |  ||||||    
T  4158632 aatttgacaccaaatcctagccattaatacaattttaatctaacggtttccattaatttattaagtgctcacatgtttgatcaaatgacatatcttttaa 4158533  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||| |||||||||||    
T  4158532 ttttagaaataatttattctttcatctcttggtta 4158498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 46619648 - 46619514
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||| | |||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  46619648 aatttgacaccaaatcatagcaattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 46619549  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||| |||||||| |||||||    
T  46619548 ttttagaaataatttattttttcttcttttggtta 46619514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 42058521 - 42058645
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||| ||||||  || ||||||||||||  |||||| ||||||||||||  ||||||||||  ||||||||   |  ||||||    
T  42058521 aatttgacaccaaatcctaactattaatataattttaatctaacggttctcataaattcattaaatgttcacatgctt--tcaaatgatataccttttaa 42058618  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||| |||||||||||||||||||||    
T  42058619 ttttaaaaataatttattctttcttct 42058645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 41696141 - 41696015
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || | |||||| |   |||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||| |||   ||||     
T  41696141 aatttgacaccaaatcttagctattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcctttat 41696042  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||  |||||||||||||||||||||    
T  41696041 tttttaaaataatttattctttcttct 41696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 29212062 - 29212155
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttct 174  Q
    |||||||||||  ||| |||||||||||||| | ||||||||||||||||| ||| |||  ||||| |||||||||||||||||| ||||||||    
T  29212062 tttaatctaacagctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattatttcttct 29212155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 24534196 - 24534111
Alignment:
Q  120 atgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatat 203  Q
    ||||||||  |||| | ||||||||||||||||||||||||||||| |||||| |||||||||  |||||||||||||| ||||||    
T  24534196 atgcttgaaaaaattatccaaattttaattttagaaataatttattatttcttttcttggttaattacttaccattttcattatat 24534111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 41695419 - 41695553
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||  |||||| |   |||||||||||| ||  |||||||||||||| |  ||||||| |||||||| ||  |||  |||||     
T  41695419 aatttgacaccaaatcctaattattaatacggttttaatctaacggcttccatcaattcattaagtgttcacatgtttgatcaagtggcccattttttat 41695518  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  41695519 ttttagaaataatttattcttttttcttttggtta 41695553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 24377937 - 24377837
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggt 180  Q
    |||||||||||  |||| |||||||| |||| |  ||||||||||||| |||||| |||  ||||||||||||||| ||| |||||||||||||||| ||    
T  24377937 tttaatctaacagctctaatcaattcgttaagtgatcacatgcttgat-aaatgaaccaccttttaattttagaaacaatctattctttcttctcttagt 24377839  T
Q  181 ta 182  Q
    ||    
T  24377838 ta 24377837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 4157900 - 4157940
Alignment:
Q  142 ttttaattttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  4157900 ttttaattttagaaataatttattctttcttctcttcgtta 4157940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 52363111 - 52363170
Alignment:
Q  123 cttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||  ||||||||||||||||||||||  ||||||||| ||| |||||||    
T  52363111 cttgatcaaatgatgcaaattttaattttagaaataaaatattctttcatctattggtta 52363170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 4157817 - 4157877
Alignment:
Q  51 ttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaa 111  Q
    ||||||||||||| ||||||||||| ||| ||| ||| ||||  | |||||||||||||||    
T  4157817 ttgacaccaaatcctaaccattaatacaattttgatcgaacggttttcatcaattcattaa 4157877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 51827597 - 51827731
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||||    
T  51827597 aatttgacaccaaatcataaccattaatccaactttaatccgacgtctctcaacaattcattaaatgctcacatgcttgatcaaatgatgcaaattttaa 51827696  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  |||||| ||||||||||||||    
T  51827697 ttttagaaataaaatattctatcttctcttggtta 51827731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 41710217 - 41710093
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||    
T  41710217 aatttgacaccaaatcataatcattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaa 41710118  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  41710117 ttttagaaacaatttattctttctt 41710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 41709554 - 41709676
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||||| | | |||||||||    
T  41709554 aatttgacaccaaatcataaccattaatccaactttaatatgacgtctctcatcaattcattaaatactcacatgtttgatcaaattatctaaattttaa 41709653  T
Q  148 ttttagaaataatttattctttc 170  Q
    ||||||||| |||||||||||||    
T  41709654 ttttagaaacaatttattctttc 41709676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 28908671 - 28908507
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||  |||||||||||||||| |||||   |||| ||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  28908671 aatttgacacaaaattctaaccattaatccaacattaattcgacgtttctcatcaattgattaaatgctcacatgcttgatcaaattatccaaattttaa 28908572  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgcac 210  Q
    ||||||||||||||||||||||||| ||||||||  ||| || ||||||| ||||||||||||||    
T  28908571 ttttagaaataatttattctttcttttcttggttgaatagttcccatttttgttatattttgcac 28908507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 30834452 - 30834288
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||  ||||| ||||||||||| |||| |||| |  | || ||||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  30834452 aatttgacattaaatcctaaccattaattcaacattaacccgatgtttctcatcaattcattaaatactcacatgcttgatcaaattatccaaattttaa 30834353  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgcac 210  Q
    ||||||||||||||||||||||||| ||||||||  ||| || ||||||| ||||||||||||||    
T  30834352 ttttagaaataatttattctttcttttcttggttgaatagttcccatttttgttatattttgcac 30834288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 51829506 - 51829342
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||| | |||||| | |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  51829506 aatttgaaatcaaatccttaccattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaattttaa 51829407  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgcac 210  Q
    ||||||||||||||||||||||||| ||||||||  ||| || || |||| ||||||||||||||    
T  51829406 ttttagaaataatttattctttcttttcttggttgaatagtttccgtttttgttatattttgcac 51829342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 53948695 - 53948818
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| |||| |||||| ||||||| | | || ||||||    
T  53948695 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcaaatgctt-atcaaattatctaatttttaa 53948793  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  53948794 ttttagaaacaatttattctttctt 53948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 43400789 - 43400704
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaat 133  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  43400789 aatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacatgcttgatcaaat 43400704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 53949334 - 53949211
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||| ||||||||||| | ||||| | | || ||||||    
T  53949334 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcacatgctt-aacaaattatctaatttttaa 53949236  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  53949235 ttttagaaacaatttattctttctt 53949211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 28907921 - 28908054
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||| |||||| |||||||||||||||||||||||  |||||||||| |||||||||||||  ||||||| ||||| ||||||  ||||||||||    
T  28907921 aatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatggtcacatgtttgattaaatgatgcaaattttaa 28908020  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  || ||||||||||||| ||||    
T  28908021 ttttagaaataaaata-tctttcttctcttagtta 28908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 53948593 - 53948485
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||||  ||||| || |    
T  53948593 aatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctctacaattcattaaatgctcacatgcttgatcaaatgatgcaaatatt-a 53948495  T
Q  148 ttttagaaat 157  Q
    ||||||||||    
T  53948494 ttttagaaat 53948485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 53949373 - 53949507
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||  ||||||| |   |||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  53949373 aatttgacaccaaatcatagtcattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgatccatcttttat 53949472  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  53949473 ttttagaaataatttattcttttttcttttggtta 53949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 47169178 - 47169044
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  47169178 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 47169079  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  47169078 ttttagaaataatttattctttcttcttttggtta 47169044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 38798287 - 38798410
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||| |||||||||||| |||||||||||  |||| || |||||||||||| ||| ||| ||||||| | ||||| | | |||||||||    
T  38798287 aatttgacaccaaattataaccattaattcaactttaatccgacgtttcacatcaattcattgaatgctcgcatgctt-aacaaattatctaaattttaa 38798385  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  38798386 ttttagaaacaatttattctttctt 38798410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 47167922 - 47168056
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   ||||||||||||  |||| | || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  47167922 aatttgacaccaaatcctagccattaatacggttttaatctaacggttctcgtaaactcattaagtgctcacatgcttgatcaagtgatccaccttttat 47168021  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  47168022 ttttagaaataatttattctttcttcttttggtta 47168056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 30833747 - 30833838
Alignment:
Q  90 acgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||||||  || ||||||||||||||||||    
T  30833747 acgtctctcaacaattcattaaatgctcacatgcttgttcaaatgatgcaaattttaattttagaaataaaata-tctttcttctcttggtta 30833838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 11238551 - 11238679
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||||||  || |||||||||||||| | |||||||||||  | ||||||   |  ||||||    
T  11238551 aatttgacaccaaatcctaaccattaatacaattttcatctaacggttcccatcaattcattaagtgctcacatgctt--ttaaatgacatactttttaa 11238648  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    |||||||||||||||||||||||| ||||||    
T  11238649 ttttagaaataatttattctttctcctcttg 11238679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 53950098 - 53949972
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |    ||||||||||| ||  |||||||||||||| | |||||||| |||||||| ||| |||  |||||     
T  53950098 aatttgacaccaaatcctagccattaatacgggcttaatctaacggcttccatcaattcattaagtgctcacatgtttgatcaagtgatccatcttttat 53949999  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    |||||||||||||||||| ||| ||||    
T  53949998 ttttagaaataatttattttttattct 53949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 20202090 - 20202222
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| |   |||||||||||| ||  |||||||||||  | | || ||||| |||||||| ||| |||  |||||     
T  20202090 aatttgacaccaaattctagccattaatacggttttaatctaacggcttccatcaattcat--agtgcttacatgtttgatcaagtgatccatcttttat 20202187  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  20202188 ttttagaaataatttattctttcttcttttggtta 20202222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 20200629 - 20200524
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| |||||||||| ||| |  ||||||||||||| || ||| |||  |||||     
T  20200629 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcactaagtgttcacatgcttgattaagtgacccatcttttat 20200530  T
Q  148 ttttag 153  Q
    ||||||    
T  20200529 ttttag 20200524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 20202813 - 20202708
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| |||||||||| ||| |  ||||||||||||| || ||| |||  |||||     
T  20202813 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcactaagtgttcacatgcttgattaagtgacccatcttttat 20202714  T
Q  148 ttttag 153  Q
    ||||||    
T  20202713 ttttag 20202708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 20199998 - 20200038
Alignment:
Q  142 ttttaattttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  20199998 ttttatttttagaaataatttattctttcttcttttggtta 20200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 38798874 - 38798788
Alignment:
Q  77 caactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttctt 172  Q
    ||||||||||   |||||||||||||||| ||||||| ||||||||||| ||| |||        ||||||||||||||| |||||||||||||||    
T  38798874 caactttaattcgacgtctctcatcaatttattaaatgctcacatgctt-atctaat--------ttttaattttagaaacaatttattctttctt 38798788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 24485976 - 24485855
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||||||  |||||||  || ||||||||||||  |  |||||||||||||| |  | ||||| ||||||||||||   |  ||||||    
T  24485976 aatttgacactaaatcatagtcattaatataattttaatctaacggtttccatcaattcattaagtggttacatgtttgatcaaatgatttaccttttaa 24485877  T
Q  148 ttttagaaataatttattcttt 169  Q
    |||||  | |||||||||||||    
T  24485876 ttttaatagtaatttattcttt 24485855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 42519675 - 42519809
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||| || |||||||||||||  ||||||||||    
T  42519675 aatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaa 42519774  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  |||||||||||||||||||||    
T  42519775 ttttagaaataaaatattctttcttctcttggtta 42519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 42520452 - 42520289
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||    
T  42520452 aatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaactttaa 42520353  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttgca 209  Q
    ||||||||||||| ||||||||||| ||||||||   || || ||||||| |||||||||||||    
T  42520352 ttttagaaataatgtattctttcttttcttggttgattagttcccatttttgttatattttgca 42520289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 42521712 - 42521578
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  42521712 aatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 42521613  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  42521612 ttttagaaataatttattctttcttcttttggtta 42521578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 23206215 - 23206089
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  23206215 aatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 23206116  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    |||||||||||||||||||||||||||    
T  23206115 ttttagaaataatttattctttcttct 23206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 42520652 - 42520786
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||| |||||||||| || |||||||| |   |||||||||||| ||||||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  42520652 aattttacaccaaatcctagccattaatacggttttaatctaacgactctcataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 42520751  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  42520752 ttttagaaataatttattctttcttcttttggtta 42520786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 21148118 - 21147984
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| |  |||||||||||||||| ||| |||  |||||     
T  21148118 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgttcacatgcttgatcaagtgacccatcttttat 21148019  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  21148018 ttttagaaataatttattctttcttcttttggtta 21147984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 21145971 - 21146097
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  |||||     
T  21145971 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttat 21146070  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||||||||||||||  |||||||||    
T  21146071 ttttagaaataatttaaactttcttct 21146097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 31218780 - 31218851
Alignment:
Q  98 catcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattcttt 169  Q
    ||||||||||| |||| |||||| | |||||||||||| |||  ||||||||||||||||||||||||||||    
T  31218780 catcaattcatcaaatgctcacaaggttgatcaaatgacccaccttttaattttagaaataatttattcttt 31218851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 31220010 - 31219884
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |   ||||||| ||  |||||| ||||| ||  ||||||||||| |  | |||| | |||||||||||||| | |  ||||||    
T  31220010 aatttgacactaaatcttcgtcattaatacagttttaatgtaacggcttccatcaattcatcatgtgctcataagcttgatcaaatgacctaccttttaa 31219911  T
Q  148 ttttagaaataatttattctttcttct 174  Q
    ||||| || ||||||||||||||||||    
T  31219910 ttttaaaattaatttattctttcttct 31219884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 1798 - 1668
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||| || |||||||||||||  ||||||||||||||    
T  1798 tgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaatttt 1699  T
Q  152 agaaataatttattctttcttctcttggtta 182  Q
    ||||||||  |||||||||||||||||||||    
T  1698 agaaataaaatattctttcttctcttggtta 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 1033 - 1191
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| ||||||| ||||||||||||   |||||| ||||| |||||    
T  1033 aatttgacaccaaatcctaaccattaattcaacattaatccaacgtctctcatcaatttattaaatgctcacatgcttg---aaatgatccaaactttaa 1129  T
Q  148 ttttagaaataatttattctttcttctcttggtt--atacttaccattttcgttatattttg 207  Q
    ||||||||||||||||||||||||| ||||||||   || || ||||||| |||||||||||    
T  1130 ttttagaaataatttattctttcttttcttggttgattagttcccatttttgttatattttg 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 121339 - 121473
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||| || |||||||||||||  ||||||||||    
T  121339 aatttgacactaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaa 121438  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||  |||||||||||||||||||||    
T  121439 ttttagaaataaaatattctttcttctcttggtta 121473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 19386330 - 19386459
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| ||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  19386330 aatttgacaccaaatcataaccattaattcaactttaatccaacatctattatcaattcattaaatgctcacatgcttgatcaaatgatccaaattttaa 19386429  T
Q  148 ttttagaaataatttattctttcttctcttg 178  Q
    ||||||||| ||||| |||||||||||||||    
T  19386430 ttttagaaacaattt-ttctttcttctcttg 19386459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 19386939 - 19386778
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| |||||||| ||||| | |||||||||||    
T  19386939 aatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcatatgcttgaacaaataatccaaattttaa 19386841  T
Q  148 ttttagaaataatttattctttcttctcttggtta--tacttaccattttcgttatattttgc 208  Q
    ||||||||||||||||||| ||||| ||||| |||  |||||||| ||||| |||||||||||    
T  19386840 ttttagaaataatttattccttcttttcttgattaattacttaccgttttcattatattttgc 19386778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 122975 - 122842
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| |||||    
T  122975 aatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatgctcacatacttgatgaaatgatccaaactttaa 122876  T
Q  148 ttttagaaataatttattctttcttctcttggtt 181  Q
    ||||||||||||| ||||||||||| ||||||||    
T  122875 ttttagaaataatgtattctttcttttcttggtt 122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 20202685 - 20202808
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||| | | || ||||||    
T  20202685 aatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgctt-atcaaattatctaatttttaa 20202783  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  20202784 ttttagaaacaatttattctttctt 20202808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 4776282 - 4776415
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| |||| ||||||||||| ||||||  ||||  |||||||||||||||||| ||||||||||||||||| ||| | |||||| ||    
T  4776282 aatttgacactaaatcctaacaattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatcaattgatcaaaatttcaa 4776381  T
Q  148 ttttagaaataatttattctttcttctcttggtt 181  Q
    ||||||||||||||||||||||||| ||||||||    
T  4776382 ttttagaaataatttattctttcttttcttggtt 4776415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 209
Target Start/End: Original strand, 38956050 - 38956201
Alignment:
Q  59 aaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaata 158  Q
    ||||| |||||||||||||| |||||||| |||||||||| |||| ||||||||| ||||||||||||| ||||| | | ||||||||||||||||||||    
T  38956050 aaatcctaaccattaatcca-ctttaatccaacgtctctcgtcaagtcattaaatgctcacatgcttgaacaaattatctaaattttaattttagaaata 38956148  T
Q  159 atttattctttcttctcttggtta--tacttaccattttcgttatattttgca 209  Q
    || ||||||||||| ||||| |||  |||||||| ||||| ||||||||||||    
T  38956149 atctattctttcttttcttgattaattacttaccgttttcattatattttgca 38956201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 8911857 - 8911734
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |  |||||||||||||||| ||||||||||| ||||||| | | |||||||||    
T  8911857 aatttgacaccaaatcataaccattaattcaactttaatccgacgttttccatcaattcattaaatgctcacatgctt-atcaaattatctaaattttaa 8911759  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  8911758 ttttagaaacaatttattctttctt 8911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 8911202 - 8911323
Alignment:
Q  49 atttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaat 148  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||| ||||||||||| ||||||| | | || |||||||    
T  8911202 atttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaa-tcattaaatactcacatgctt-atcaaattatctaatttttaat 8911299  T
Q  149 tttagaaataatttattctttctt 172  Q
    |||||||| |||||||||||||||    
T  8911300 tttagaaacaatttattctttctt 8911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 39629535 - 39629401
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| ||  |||||||||||| |||||||||||||||||| | |||||||||||||| || ||| |||  |||||     
T  39629535 aatttgacaccaaattctagccattaatacagttttaatctaacggctctcatcaattcattaagtgctcacatgcttgattaagtgacccatcttttat 39629436  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  39629435 ttttagaaataatttattctttcttcttttggtta 39629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 20203320 - 20203197
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| | ||||||||||||| ||| ||||||||||| | ||||| |   |||||||||    
T  20203320 aatttgacaccaaatcataaccattaattcaactttaatccgacgtttttcatcaattcattgaatgctcacatgctt-aacaaattatataaattttaa 20203222  T
Q  148 ttttagaaataatttattctttctt 172  Q
    ||||||||| |||||||||||||||    
T  20203221 ttttagaaacaatttattctttctt 20203197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 42848752 - 42848886
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || ||||||||     |||||||||||| ||| |||||||||||||| |  |||||||||||||||| ||| |||  |||||     
T  42848752 aatttgacaccaaatcctagccattaatatggttttaatctaacgactcccatcaattcattaagtgttcacatgcttgatcaagtgacccatcttttat 42848851  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  42848852 ttttagaaataatttattctttcttcttttggtta 42848886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 42849519 - 42849385
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || |||||||| |   |||||||||||| ||| |||||||||||||| | |||||||||||||| || ||| |||  |||||     
T  42849519 aatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgattaagtgacccatcttttat 42849420  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  42849419 ttttagaaataatttattcttttttcttttggtta 42849385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 39628805 - 39628906
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggt 180  Q
    |||||||||||| ||  |||||||||||||| | ||||||||||||||||| ||| |||  ||||| ||||||||||||||||||||||||||| |||||    
T  39628805 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttcttttggt 39628904  T
Q  181 ta 182  Q
    ||    
T  39628905 ta 39628906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 4776987 - 4776896
Alignment:
Q  91 cgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||| ||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||||||  |||||||||||| ||||||||    
T  4776987 cgtctttcaacaattcattaaatgctcatatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttcgcttggtta 4776896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 44929138 - 44929019
Alignment:
Q  59 aaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaata 158  Q
    ||||| || ||||||||  || ||||||||||||    ||||||||||||||||| |||||||  |||||||||||| |||  |||||||||||||||||    
T  44929138 aaatcctagccattaatataattttaatctaacggtgttcatcaattcattaaatgctcacatatttgatcaaatgacccaccttttaattttagaaata 44929039  T
Q  159 atttattctttcttctcttg 178  Q
    ||||||| ||||||||||||    
T  44929038 atttattatttcttctcttg 44929019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 2477242 - 2477372
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    |||||||||||| || |||||||| |   |||||||||||| ||  ||| || ||||||| | ||||||||||||||||| ||| |||  ||||| ||||    
T  2477242 tgacaccaaatcctagccattaatacggttttaatctaacggcttccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttattttt 2477341  T
Q  152 agaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||| || |||||||    
T  2477342 agaaataatttattctttctccttttggtta 2477372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 2477973 - 2477851
Alignment:
Q  52 tgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaatttt 151  Q
    |||||||||||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||||||||||||| ||| |||  ||||||||||    
T  2477973 tgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttaatttt 2477874  T
Q  152 agaaataatttattctttcttct 174  Q
    ||||||||||||  |||||||||    
T  2477873 agaaataatttaaactttcttct 2477851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 13327779 - 13327913
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| |   |||||||||||| |||  || || ||||| |   ||||||||||||||||| ||| |||  |||||     
T  13327779 aatttgacaccaaatcctaaccattaatacggttttaatctaacggctccgataaactcattgagcgctcacatgcttgatcaagtgacccaccttttat 13327878  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||| |||||||| |||||||    
T  13327879 ttttagaaataatttattatttcttcttttggtta 13327913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 13328832 - 13328698
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||  || |||||||| |   |||||||||||| ||  ||| || | ||||| | ||||||||||||||||| ||| |||  |||||     
T  13328832 aatttgacaccaaattctagccattaatacgggtttaatctaacgacttccataaacttattaagtgctcacatgcttgatcaagtgacccaccttttat 13328733  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||| ||||||||||||||||||||| |||||||    
T  13328732 ttttaaaaataatttattctttcttcttttggtta 13328698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 38273586 - 38273720
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| || ||||||||  |  ||||||| |||| |||| ||||||||  ||| | |||||||  ||||| ||||||||||  ||||||    
T  38273586 aatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattctataagtgctcacatatttgattaaatgagccaccttttaa 38273685  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||| ||  |||||||||||||||| ||||    
T  38273686 ttttagaaacaacctattctttcttctcttagtta 38273720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 44926676 - 44926794
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaatt-ctcacatgcttgatcaaatgagccaaatttta 146  Q
    ||||| ||| |||||| || |||||||| ||  |||||| |||||  ||  |||||||||||||| | ||||||| ||||||||| ||| |||  |||||    
T  44926676 aattttacatcaaatcctacccattaatacagttttaatttaacggttccaatcaattcattaaagtgctcacatacttgatcaactgatccatctttta 44926775  T
Q  147 attttagaaataatttatt 165  Q
    |||||| ||||||||||||    
T  44926776 attttacaaataatttatt 44926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 25649 - 25783
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    ||||||||||||||||  | |||||||| ||  ||||||||||||||||||||||||||||||| |  |||||||||||||||| |||   |  |||||     
T  25649 aatttgacaccaaatcccagccattaatacagttttaatctaacgtctctcatcaattcattaagtgttcacatgcttgatcaagtgacaaatgttttat 25748  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  25749 ttttagaaataatttattctttcttcttttggtta 25783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 105545 - 105679
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| |   |||||||||||| ||| |||||||||||||  |  |||||||||||||||| |||  ||  |||||     
T  105545 aatttgacaccaaatcttaaccattaatacggttttaatctaacggctcccatcaattcattatgtgttcacatgcttgatcaagtgacgcatcttttat 105644  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  105645 ttttagaaataatttattctttcttcttttggtta 105679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 106310 - 106176
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||||||| ||||||||||| |    ||||||||||| | | |||||||||||||| | ||||||||||||||||| ||| |||  |||||     
T  106310 aatttgacaccaaatcctaaccattaatacgggcttaatctaacggcgcccatcaattcattaagtgctcacatgcttgatcaagtgatccatcttttat 106211  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    |||||||||||||||||||||| |||| |||||||    
T  106210 ttttagaaataatttattctttattcttttggtta 106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 20765 - 20897
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||| ||||| || |||||||| | | |||||||||| | |||  || |||||||||| |  ||||||| |||||||| ||| |||  ||||||    
T  20765 aatttgacactaaatcctagccattaatactattttaatctaatggctc--attaattcattaagtgatcacatgtttgatcaagtgatccaccttttaa 20862  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  20863 ttttagaaataatttattctttcttcttttggtta 20897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 2312 - 2211
Alignment:
Q  81 tttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttggt 180  Q
    |||||||||||| ||  ||| || ||||||| | ||||||||||||||||| ||| |||  ||||| ||||||||||||||||||||||||||| |||||    
T  2312 tttaatctaacggcttccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttcttttggt 2213  T
Q  181 ta 182  Q
    ||    
T  2212 ta 2211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 650 - 779
Alignment:
Q  48 aatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatgcttgatcaaatgagccaaattttaa 147  Q
    |||||||||||| ||| || |||||||| |   |||||||||||| ||| ||| || ||||||| | ||||||     |||||| ||| |||  |||||     
T  650 aatttgacaccagatcctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcaca-----gatcaagtgatccaccttttat 744  T
Q  148 ttttagaaataatttattctttcttctcttggtta 182  Q
    ||||||||||||||||||||||||||| |||||||    
T  745 ttttagaaataatttattctttcttcttttggtta 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 441 times since January 2019
Visitors: 6714