View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_44 (Length: 251)
Name: NF0927_low_44
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 3530003 - 3530236
Alignment:
| Q |
15 |
tattactttgggatatgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgctta |
114 |
Q |
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| T |
3530003 |
tattactttgggatatgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgctta |
3530102 |
T |
|
| Q |
115 |
taattagaaatggatggagcaatattttgcaagttagtatgaatgataggtgagtagaaattgcctccatttcaatgctattaagtgaacactacatatc |
214 |
Q |
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| T |
3530103 |
taattagaaacggagggagcaatgttttgcaagttagtatgaatgataggtgagtagaaattgcctccatttcaatgctattaagtgaacactatatatc |
3530202 |
T |
|
| Q |
215 |
aacatttgacaccggagaatgttattaatcatgt |
248 |
Q |
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| T |
3530203 |
aacatttgacactggagaatattattaatcatgt |
3530236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 15898418 - 15898361
Alignment:
| Q |
36 |
aaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaa |
93 |
Q |
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| T |
15898418 |
aaaaataataataaatgcatctagtaatttgaaaaagagtttatatttagggacaaaa |
15898361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 41672490 - 41672404
Alignment:
| Q |
36 |
aaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaa-gtttttctcaaaaagtgcttataattag |
121 |
Q |
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| T |
41672490 |
aaaaaaaataataaatgcatctagtaatttgtataagggcttatatttagggacaaaacttttttctaaaagagtgcttataattag |
41672404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 12998645 - 12998564
Alignment:
| Q |
37 |
aaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataat |
118 |
Q |
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|||| |||||| |||||||| ||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
12998645 |
aaaaaaataattaatgcatcgagtaatttgtataagggcttatatttagggacacatttttttctcaaagagtgcttataat |
12998564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 8818094 - 8818002
Alignment:
| Q |
30 |
tgttttaaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagtttttctcaaaaagtgcttataattaga |
122 |
Q |
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||||| |||||||||||||||| |||| ||| |||| || || | ||||||||||| ||| | | ||||||||||| |||| || |||||||| |
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| T |
8818094 |
tgtttaaaaaataataataaatacatctagtaatttatataaaagcttatatttagagaccacaatttttctcaaagagtgtttgtaattaga |
8818002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 35145353 - 35145435
Alignment:
| Q |
12 |
taatattactttgggatatgtttt--aaaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaa |
93 |
Q |
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|||||||| || ||||||||||| ||||| ||||||||||||||| ||| ||||| | |||| |||||||||||||||||| |
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| T |
35145353 |
taatattaattagggatatgtttaggaaaaaaaataataaatgcatctagtaatttg-aaaagagtttatatttagggacaaaa |
35145435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 33231988 - 33232046
Alignment:
| Q |
37 |
aaaataataataaatgcatcaagtcatttgtagaagaacttatatttagggacaaaagt |
95 |
Q |
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|||| ||||||||||||||| ||| ||||| | | ||| |||||||||||||||||||| |
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| T |
33231988 |
aaaaaaataataaatgcatctagtaatttgaaaatgaatttatatttagggacaaaagt |
33232046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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