View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0927_low_5 (Length: 512)
Name: NF0927_low_5
Description: NF0927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0927_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 30 - 507
Target Start/End: Complemental strand, 3527443 - 3526963
Alignment:
| Q |
30 |
gcattgactacgttaactctacacaaccaccagacatttgctgcaatccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgc |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527443 |
gcattgactacattaactctacacaaccaccagacatttgctgcaatccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgc |
3527344 |
T |
|
| Q |
130 |
agcttatggcttatttgaagcttttggtttgaaaattactcaggttttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527343 |
agcttatggcttatttgaagcttttggtttgaaaattactcaggttttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggt |
3527244 |
T |
|
| Q |
230 |
atgtgaaatgaaaacatatttaatacttcttccgtcctaaatcgactgacccattgaagaagnnnnnnnntttgatttttagagg-atattactttttta |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
3527243 |
atgtgaaatgaaaacatatttaatacttcttccgtcctaaatcgactgacccattgaagaa--aaaaaaaattgatttttagaggaatattactttttta |
3527146 |
T |
|
| Q |
329 |
ttttccaattctaccata----taagtacactactttcatcaattcaatttataataataatgagattacatcaatccatgcatttatatcctgatattt |
424 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3527145 |
ttttccaattctaccatataattaagtacactactttcatcaattcaatttataataataatgagattacatcaatacatgcatttatatcctgatattt |
3527046 |
T |
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| Q |
425 |
cgtaattggaaattttcagcttcttctccaactcttcccctgtcgtcattgcagcccccaggtaaaatcctcttcatctcact |
507 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3527045 |
ccttattggaaattttcagcttcttctccaactcttcccctgtcgtcattgcagcccccaggtaaaatcctcttcatttcact |
3526963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 3537010 - 3536979
Alignment:
| Q |
56 |
ccaccagacatttgctgcaatccaattaaaga |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3537010 |
ccaccagacatttgctgcaatccaattaaaga |
3536979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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