View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_105 (Length: 347)
Name: NF0928_high_105
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_105 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 170 - 319
Target Start/End: Original strand, 9870827 - 9870976
Alignment:
| Q |
170 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
269 |
Q |
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| T |
9870827 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
9870926 |
T |
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| Q |
270 |
atattcttttagatatgtcgatttcaatttcgacctacatggtttttatt |
319 |
Q |
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| T |
9870927 |
atattcttttagacatgtcgatttcaatttcgacctacatggtttttatt |
9870976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 9870670 - 9870770
Alignment:
| Q |
14 |
atattaacatttattgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
113 |
Q |
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| T |
9870670 |
atattaacatttaccgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaatcagggtacatg |
9870769 |
T |
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| Q |
114 |
c |
114 |
Q |
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| T |
9870770 |
c |
9870770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 9876367 - 9876514
Alignment:
| Q |
172 |
tatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctacta |
270 |
Q |
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|||||||||| ||| ||| ||||| |||||| || || |||||||| ||| ||||||||||| |||||||| ||||||| ||||||||||||||||| |
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| T |
9876367 |
tatgttcctaatgccagtacttacctatgacactatatcatcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctacta |
9876466 |
T |
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| Q |
271 |
tattcttttagatatgtcgatttcaatttcgacctacatggtttttat |
318 |
Q |
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| T |
9876467 |
taatcttttagacatgtccatttcaatatggacctacatggattttat |
9876514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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