View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_109 (Length: 344)
Name: NF0928_high_109
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_109 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 50033077 - 50033379
Alignment:
| Q |
13 |
aatatatcatcatacacaaagccaaaccaagagctatagagaaaatttccctctacataattagaaacaggtgttaaggaattgagtcacccaaaaggct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50033077 |
aatatatcatcatacacaaagccaaaccaagagctatagagaaaatttccctctacataattagaaacaggtgttaaggaattgagtcacccaaaaggct |
50033176 |
T |
|
| Q |
113 |
caaaatttatgtgtactattattgtgtggccatgtggtttggaagtggaaggaaactcttgtatttctctatggtaatgtttttggcaacaacgttgtta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50033177 |
caaaatttatgtgtactattattgtgtggccatgtggtttggaagtggaaggaaactcttgtatttctctatggtaatgtttttggcaacaactttgtta |
50033276 |
T |
|
| Q |
213 |
cagatgtgggtctgctgccactcgtgccaggttggagctattcgtatattcccaggaaatgatgtggcaaacgtggaattcaaccaagatgttatgcata |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50033277 |
cagatgtgggtctgctgccaatcgtgccaggttggagctattcgtatattcccaggaaatgatgtggcaaacgtggaattcaaccaagatgttatgcata |
50033376 |
T |
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| Q |
313 |
aca |
315 |
Q |
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||| |
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| T |
50033377 |
aca |
50033379 |
T |
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