View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_113 (Length: 339)
Name: NF0928_high_113
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_113 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 52423057 - 52423385
Alignment:
| Q |
1 |
caccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaat |
100 |
Q |
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| T |
52423057 |
caccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaat |
52423156 |
T |
|
| Q |
101 |
tctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttcc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423157 |
tctgtgaatagaagatgacaacataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttcc |
52423256 |
T |
|
| Q |
201 |
aagtcagtgnnnnnnncctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttcta |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423257 |
aagtcagtgaaaaaaacctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttcta |
52423356 |
T |
|
| Q |
301 |
tctcttatttcgaaggggattcgtctctg |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
52423357 |
tctcttatttcgaaggggattcgtctctg |
52423385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 42715959 - 42716166
Alignment:
| Q |
1 |
caccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctgagtagagcaacttcttcca- |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| || |
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| T |
42715959 |
caccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctgagtagagaaacttcttacag |
42716058 |
T |
|
| Q |
99 |
attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tccagttccttagattacaagtt |
197 |
Q |
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|| |||| ||||||||||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| |||| |||||||||||||||||| |
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| T |
42716059 |
tttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctccaattccttagattacaagtt |
42716158 |
T |
|
| Q |
198 |
tccaagtc |
205 |
Q |
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|||||||| |
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|
| T |
42716159 |
tccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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