View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_128 (Length: 323)
Name: NF0928_high_128
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_128 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 13741280 - 13741147
Alignment:
| Q |
61 |
cttaattttttgtattaaaagagaagaagggagaaagatgcacaaacaacacatatctctaggtatggcaacacctaaatttattggaggtatatgatta |
160 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13741280 |
cttaattttttgtattgaaagagaagaagggagaaagatgcacagacaacacatatctctaggtatcgcaacacctaaatttattggaggtatatgatta |
13741181 |
T |
|
| Q |
161 |
gttctaacatattttcttgcttttgggtagaatt |
194 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
13741180 |
attctaacatattttcttgcttttgtatagaatt |
13741147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 13746780 - 13746647
Alignment:
| Q |
61 |
cttaattttttgtattaaaagagaagaagggagaaagatgcacaaacaacacatatctctaggtatggcaacacctaaatttattggaggtatatgatta |
160 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13746780 |
cttaattttttgtattgaaagagaagaagggagaaagatgcacagacaacacatatctctaggtatcgcaacacctaaatttattggaggtatatgatta |
13746681 |
T |
|
| Q |
161 |
gttctaacatattttcttgcttttgggtagaatt |
194 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
13746680 |
attctaacatattttcttgcttttgtatagaatt |
13746647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 13741108 - 13741002
Alignment:
| Q |
217 |
taatgcattcaaagaaaaatcatttaacattcaacttacttttaatctgtatcaattttacaaaataaattctttatttaaacagccaatattattgaga |
316 |
Q |
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|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
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| T |
13741108 |
taatgcgtttaatgaaaaatcatttaacattcaacttacttttaatctgtatcaattttacaaaataaattcattttttaaaaagccaatattattgaga |
13741009 |
T |
|
| Q |
317 |
taaactc |
323 |
Q |
| |
|
||||||| |
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|
| T |
13741008 |
taaactc |
13741002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 13746608 - 13746502
Alignment:
| Q |
217 |
taatgcattcaaagaaaaatcatttaacattcaacttacttttaatctgtatcaattttacaaaataaattctttatttaaacagccaatattattgaga |
316 |
Q |
| |
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|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |
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| T |
13746608 |
taatgcgtttaatgaaaaatcatttaacattcaacttacttttaatctgtatcaattttacaaaataaattcattttttaaaaagccaatattattgaga |
13746509 |
T |
|
| Q |
317 |
taaactc |
323 |
Q |
| |
|
||||||| |
|
|
| T |
13746508 |
taaactc |
13746502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 24916587 - 24916636
Alignment:
| Q |
233 |
aaatcatttaacattcaacttacttttaatctgtatcaattttacaaaat |
282 |
Q |
| |
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||||||||| |||||||||| ||||||| ||| |||||||||||||||| |
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|
| T |
24916587 |
aaatcattttacattcaactcacttttagcctgaatcaattttacaaaat |
24916636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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