View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_13 (Length: 702)
Name: NF0928_high_13
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Complemental strand, 27105615 - 27105060
Alignment:
| Q |
11 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105615 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
27105516 |
T |
|
| Q |
111 |
gaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105515 |
gaaacagtgttgaccattgtagctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
27105416 |
T |
|
| Q |
211 |
ctgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105415 |
ctgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaa |
27105316 |
T |
|
| Q |
311 |
aaattcaatcaacacgttggagacgaattataacgaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggtttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105315 |
aaattcaatcaacacgttggagacgaattataaagaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggtttt |
27105216 |
T |
|
| Q |
411 |
cttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctc |
510 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105215 |
cttgatggaaatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctc |
27105116 |
T |
|
| Q |
511 |
ctaataaatttgacaatgatgatccatcaatgaaaggagggattaagatttttact |
566 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27105115 |
ctaataaatttgacaatgatgatccatctatgaaaggagggattaagatttttact |
27105060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Complemental strand, 27098616 - 27098061
Alignment:
| Q |
11 |
gatgaaggaaagtggaggtataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggt |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27098616 |
gatgaaggaaagtggaaatataaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggt |
27098517 |
T |
|
| Q |
111 |
gaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
210 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098516 |
gaaacagtactgaccattgtagcaggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaaca |
27098417 |
T |
|
| Q |
211 |
ctgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaa |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27098416 |
ctgtgttaaaagttagtgagctcgatgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgcttccaccactgattttgtcaa |
27098317 |
T |
|
| Q |
311 |
aaattcaatcaacacgttggagacgaattataacgaggaatccaggatgctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggtttt |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27098316 |
aaattcaatcaacacgttggagactaattataacgaggaatcaaggatggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggtttt |
27098217 |
T |
|
| Q |
411 |
cttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctc |
510 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||| |
|
|
| T |
27098216 |
cttgatggaaatgtagattttggtgggaacgaagcagtgaatttagtaccagcaccatgcaacatgtttgcgtcaattgaaattagcatttttacatctc |
27098117 |
T |
|
| Q |
511 |
ctaataaatttgacaatgatgatccatcaatgaaaggagggattaagatttttact |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27098116 |
ctaataaatttgacaatgatgatccatcaatgaaaggaggggttaagatttttact |
27098061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 27056765 - 27056458
Alignment:
| Q |
30 |
ataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
129 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
27056765 |
ataaggttcacaacttttgagt-acttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattg |
27056667 |
T |
|
| Q |
130 |
taactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcga |
229 |
Q |
| |
|
| ||||||||||||||| ||| |||||| ||| |||||||||| || || ||||| ||||| | | |||| ||| ||| |||||||| || || |
|
|
| T |
27056666 |
cagttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtga |
27056567 |
T |
|
| Q |
230 |
gctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttg |
329 |
Q |
| |
|
|||| | |||| |||||||||||||||| |||| || || | |||||||||||| ||||||| || |||||| | ||| ||| ||||| ||| | ||| |
|
|
| T |
27056566 |
gctcaacgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactcaataaactctttg |
27056467 |
T |
|
| Q |
330 |
gagacgaat |
338 |
Q |
| |
|
||||||||| |
|
|
| T |
27056466 |
gagacgaat |
27056458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 62 - 565
Target Start/End: Complemental strand, 27045834 - 27045325
Alignment:
| Q |
62 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggatttt |
161 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| || || |||||||||||||| |||| | || | |
|
|
| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
27045735 |
T |
|
| Q |
162 |
gaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattatta |
261 |
Q |
| |
|
|| ||||| |||| || |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||||||||||| ||| |
|
|
| T |
27045734 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
27045635 |
T |
|
| Q |
262 |
acctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaa---cacgttggagacgaattataacgaggaatccaggat |
358 |
Q |
| |
|
| | || | |||| ||||||| ||||||||| ||||||||| | ||||||| || ||| | ||| ||||||| | |||| | || | || || |
|
|
| T |
27045634 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcat |
27045535 |
T |
|
| Q |
359 |
gctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatg---tagattttggtgggcatgaagcagtgaattta |
455 |
Q |
| |
|
| ||| |||||| |||||| ||||||| |||||||| |||||||||||| |||||| | || |||||||||| ||| ||||| |||||||||| |
|
|
| T |
27045534 |
ggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaatttt |
27045435 |
T |
|
| Q |
456 |
gtaccagcaccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttgacaatgatgatccatcaatgaaaggagggatta |
555 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| | ||||||| || ||||| |||| |||| ||||||||||||||||||||||||| ||| |
|
|
| T |
27045434 |
gtaccagcaccatgcaacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatgatccatcaatgaaaggaggagtta |
27045335 |
T |
|
| Q |
556 |
agatttttac |
565 |
Q |
| |
|
|||||||||| |
|
|
| T |
27045334 |
agatttttac |
27045325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 27085932 - 27085670
Alignment:
| Q |
29 |
tataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccatt |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||| | | |||||| |
|
|
| T |
27085932 |
tataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccatt |
27085833 |
T |
|
| Q |
129 |
gtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcg |
228 |
Q |
| |
|
| | ||||| ||||||||| || ||||||| ||| |||||||||| || |||||||||||||| | | |||| ||| ||| |||||||| || | |
|
|
| T |
27085832 |
gcagttggtagtagacgcaacttaaaggattatgatactttacctaaagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtg |
27085733 |
T |
|
| Q |
229 |
agctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgctt |
291 |
Q |
| |
|
|||| | |||| |||||||||||||| ||||| || || | |||||||||||| ||||||| |
|
|
| T |
27085732 |
tgctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctt |
27085670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 27041450 - 27041354
Alignment:
| Q |
33 |
aggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27041450 |
aggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 303
Target Start/End: Complemental strand, 27069871 - 27069602
Alignment:
| Q |
34 |
ggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaac |
133 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| || ||||| | ||||| || ||| || || |
|
|
| T |
27069871 |
ggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagt |
27069772 |
T |
|
| Q |
134 |
tggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctc |
233 |
Q |
| |
|
|||||| ||||| || |||| ||||||||| ||||||| || || ||||| |||||||| | |||||||| ||| |||||||| || |||||| |
|
|
| T |
27069771 |
tggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctc |
27069672 |
T |
|
| Q |
234 |
gatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgatt |
303 |
Q |
| |
|
||||||| |||||||||||||||| |||| || || | |||||||||||| ||| ||| ||||||||||| |
|
|
| T |
27069671 |
gatgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgatt |
27069602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 27062809 - 27062547
Alignment:
| Q |
29 |
tataaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccatt |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| || | | | |
|
|
| T |
27062809 |
tataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtg |
27062710 |
T |
|
| Q |
129 |
gtaactggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcg |
228 |
Q |
| |
|
|| |||||| ||||| || |||| ||||| |||| |||||||||| || |||||||| ||||| | |||||||| ||| |||||||| || | |
|
|
| T |
27062709 |
ttagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtg |
27062610 |
T |
|
| Q |
229 |
agctcgatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgctt |
291 |
Q |
| |
|
| |||||||||| |||||||||| |||| |||| || || | |||||||||||| ||||||| |
|
|
| T |
27062609 |
aactcgatgaaatgccactctataaaatcgttaagctgattaaagagactaaaaatattgctt |
27062547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 27069530 - 27069430
Alignment:
| Q |
369 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
468 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| ||||||| ||| | || |||||||||| || |||||| |||||||||||||||||||| | |
|
|
| T |
27069530 |
ggtgcagtaacagttttgacagagtggaagcatttgggttttc---atgaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgt |
27069434 |
T |
|
| Q |
469 |
gcaa |
472 |
Q |
| |
|
|||| |
|
|
| T |
27069433 |
gcaa |
27069430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 27062463 - 27062421
Alignment:
| Q |
369 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttc |
411 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27062463 |
ggtgcagtaacggttctaacagagtggaaacatttgggttttc |
27062421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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