View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_130 (Length: 319)
Name: NF0928_high_130
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_130 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 371091 - 370822
Alignment:
| Q |
30 |
ccatgcttaccttctcaactactcatgggtgaactcgaagtttctctaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaaca |
129 |
Q |
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| T |
371091 |
ccatgcttaccttctcaactactcatgggtgaactcgaagtttctccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaaca |
370992 |
T |
|
| Q |
130 |
acaattcatgggccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattcca |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
370991 |
acaattcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattcca |
370892 |
T |
|
| Q |
230 |
cttggaggtttctagggattgctaatgcatccttgctcagactaaaacttttacgggcatttgggttatg |
299 |
Q |
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| T |
370891 |
cttggaggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatg |
370822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 299
Target Start/End: Complemental strand, 1459800 - 1459578
Alignment:
| Q |
77 |
aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat |
176 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| ||| | |||| || |||| ||| |||||||||||||||||||| ||| |||| |||| |
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| T |
1459800 |
aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat |
1459701 |
T |
|
| Q |
177 |
caagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaa |
276 |
Q |
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| T |
1459700 |
caagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaat |
1459601 |
T |
|
| Q |
277 |
cttttacgggcatttgggttatg |
299 |
Q |
| |
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||||| || |||||||||||| |
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| T |
1459600 |
cttttttggatatttgggttatg |
1459578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 81 - 299
Target Start/End: Complemental strand, 1471178 - 1470960
Alignment:
| Q |
81 |
aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag |
180 |
Q |
| |
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||||||||| |||| ||||||||||||||| |||||||| || |||| || |||| ||| ||||||||||||| |||||| ||| |||| |||||||| |
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| T |
1471178 |
aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag |
1471079 |
T |
|
| Q |
181 |
agatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttt |
280 |
Q |
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| T |
1471078 |
agattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttt |
1470979 |
T |
|
| Q |
281 |
tacgggcatttgggttatg |
299 |
Q |
| |
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| || |||||||||||| |
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| T |
1470978 |
tttggatatttgggttatg |
1470960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
| Q |
81 |
aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag |
180 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| |||| || | || || |||||||| ||||||||| |||||||||| || |||| |||||||| |
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| T |
7565006 |
aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag |
7564907 |
T |
|
| Q |
181 |
agatttcgcagcctgattatggt |
203 |
Q |
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|||||| |||||| ||||||||| |
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| T |
7564906 |
agattttgcagccagattatggt |
7564884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
| Q |
144 |
attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg |
201 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||| |
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|
| T |
1442291 |
attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg |
1442234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 1453989 - 1453908
Alignment:
| Q |
187 |
cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca |
268 |
Q |
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||||||| |||| |||||||||||| ||||||| ||| || ||||| || ||||||||||||| ||||||||||||||| |
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| T |
1453989 |
cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca |
1453908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 1465681 - 1465600
Alignment:
| Q |
187 |
cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca |
268 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||| ||| || ||||| || ||||||||||||| ||||||||||||||| |
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| T |
1465681 |
cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca |
1465600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 9820017 - 9819957
Alignment:
| Q |
142 |
ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg |
202 |
Q |
| |
|
||||| ||||||||||||| | | ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
9820017 |
ccattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg |
9819957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 9825697 - 9825637
Alignment:
| Q |
142 |
ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg |
202 |
Q |
| |
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||||| ||||||||||||| | | ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
9825697 |
ccattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg |
9825637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 3926855 - 3926985
Alignment:
| Q |
81 |
aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag |
180 |
Q |
| |
|
|||||||||||||| || |||||||||| |||| | || |||||||| | ||||||||| |||||||||||||||||||| ||| |||| ||||||| |
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|
| T |
3926855 |
aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag |
3926954 |
T |
|
| Q |
181 |
agatttcgcagcctgattatggtctagatga |
211 |
Q |
| |
|
||||||| | ||| |||| |||||| ||||| |
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|
| T |
3926955 |
agatttcacggcccgattttggtcttgatga |
3926985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
| Q |
81 |
aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag |
180 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||| || |||| || || ||||| |||||||||||| ||||||| ||| |||| |||||||| |
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| T |
55419578 |
aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag |
55419677 |
T |
|
| Q |
181 |
agatttcgcagcctgattatggtctagatgaacc |
214 |
Q |
| |
|
|||| |||| || || ||||||||||||||||| |
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|
| T |
55419678 |
tgattccgcatcccgagtatggtctagatgaacc |
55419711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
| Q |
141 |
gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg |
202 |
Q |
| |
|
|||||| |||||||| |||| | ||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
25478730 |
gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg |
25478791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
| Q |
141 |
gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg |
202 |
Q |
| |
|
|||||| |||||||| |||| | |||||||| |||||||| ||||| |||||||||||||| |
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|
| T |
25869364 |
gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg |
25869303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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