View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_136 (Length: 317)
Name: NF0928_high_136
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_136 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 39299997 - 39300306
Alignment:
| Q |
1 |
aatgacttgccaatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataa |
100 |
Q |
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| T |
39299997 |
aatgacttgccaatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataa |
39300096 |
T |
|
| Q |
101 |
aatgaaatgacttgccaatcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300097 |
aatgaaatgacttgccagtcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggac |
39300196 |
T |
|
| Q |
201 |
ttcaaaatttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300197 |
ttcaaaatttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttc |
39300296 |
T |
|
| Q |
301 |
agtataatct |
310 |
Q |
| |
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|||||||||| |
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| T |
39300297 |
agtataatct |
39300306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 39247896 - 39247997
Alignment:
| Q |
209 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
308 |
Q |
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| T |
39247896 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
39247995 |
T |
|
| Q |
309 |
ct |
310 |
Q |
| |
|
|| |
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| T |
39247996 |
ct |
39247997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 39196652 - 39196746
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
310 |
Q |
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|||||||||||||||| |||||| |||||| ||| || |||||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||| |
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| T |
39196652 |
tacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39196746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 39218224 - 39218318
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
310 |
Q |
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| T |
39218224 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39218318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 39225322 - 39225416
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
310 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||| || || ||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||| |
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| T |
39225322 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39225416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 39179407 - 39179501
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
310 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||| || ||||||||||||| ||||||||||| ||||| ||||| ||||| | ||| |||||| |
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| T |
39179407 |
tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcctgagtgtaatct |
39179501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 39240973 - 39241035
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
278 |
Q |
| |
|
||||||| | ||||||||||||| ||||| |||| || |||||||||||||||||||| |||| |
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| T |
39240973 |
tacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgcctt |
39241035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 39258403 - 39258465
Alignment:
| Q |
216 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt |
278 |
Q |
| |
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|||||||||| || || |||||| |||||||||| || |||||||||||||| ||| |||||| |
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| T |
39258403 |
tacctactataaaagagcaagctttccatcttccggtctttgatcttaaaaccggtttacctt |
39258465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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