View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_144 (Length: 312)
Name: NF0928_high_144
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_144 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 30506656 - 30506534
Alignment:
| Q |
177 |
cttaaaagttgttacaaaatagttttacaaatatcattattcaaaatcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac |
276 |
Q |
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| T |
30506656 |
cttaaaagttgttacaaaatggttttacagctatcattattcaaagtcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac |
30506557 |
T |
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| Q |
277 |
ttaatatttattcgatacaagta |
299 |
Q |
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| T |
30506556 |
tcaatatttattcgacacaagta |
30506534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 30506788 - 30506718
Alignment:
| Q |
44 |
ccacataattcaaaagaaaattgactgtacatttgaacaattacatctcttatactttatattttgtttctac |
116 |
Q |
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| T |
30506788 |
ccacataattcaaaagaaaattgactgtac-tttgaacaattacatctcttatac-ttatattttgtttctac |
30506718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 37848559 - 37848594
Alignment:
| Q |
180 |
aaaagttgttacaaaatagttttacaaatatcatta |
215 |
Q |
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| T |
37848559 |
aaaagttgttacaaaatagttatacaaatatcatta |
37848594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 42225799 - 42225842
Alignment:
| Q |
180 |
aaaagttgttacaaaatagttttacaaatatcattattcaaaat |
223 |
Q |
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| T |
42225799 |
aaaagttgttacaaaatggttttacaaatatcatttctcaaaat |
42225842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 42815442 - 42815408
Alignment:
| Q |
180 |
aaaagttgttacaaaatagttttacaaatatcatt |
214 |
Q |
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| T |
42815442 |
aaaagttgttacaaaatagttgtacaaatatcatt |
42815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 6290498 - 6290466
Alignment:
| Q |
182 |
aagttgttacaaaatagttttacaaatatcatt |
214 |
Q |
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| T |
6290498 |
aagttgttacaaaatagttgtacaaatatcatt |
6290466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 47014979 - 47014943
Alignment:
| Q |
178 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
214 |
Q |
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| T |
47014979 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
47014943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 42640881 - 42640840
Alignment:
| Q |
180 |
aaaagttgttacaaaatagttttacaaatatcattattcaaa |
221 |
Q |
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| T |
42640881 |
aaaagttgttagaaaatagttgtacaaatatcatttttcaaa |
42640840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 1118 - 1082
Alignment:
| Q |
178 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
214 |
Q |
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| T |
1118 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
1082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 7867742 - 7867778
Alignment:
| Q |
178 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
214 |
Q |
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||||||||||| ||||||||||| ||||||||||||| |
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| T |
7867742 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
7867778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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