View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_149 (Length: 296)
Name: NF0928_high_149
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_149 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 81 - 256
Target Start/End: Original strand, 7623250 - 7623425
Alignment:
| Q |
81 |
tggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataatg |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7623250 |
tggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaacaatg |
7623349 |
T |
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| Q |
181 |
gaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttct |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623350 |
gaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttct |
7623425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 7629559 - 7629731
Alignment:
| Q |
81 |
tggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataatg |
180 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||| || |||| |
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| T |
7629559 |
tggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatccaaccaaacaatg |
7629658 |
T |
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| Q |
181 |
gaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttct |
253 |
Q |
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|||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |
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| T |
7629659 |
gaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttct |
7629731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 7636342 - 7636514
Alignment:
| Q |
81 |
tggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacccaacctaataatg |
180 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| || |||| |
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| T |
7636342 |
tggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaatg |
7636441 |
T |
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| Q |
181 |
gaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttct |
253 |
Q |
| |
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|||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |
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| T |
7636442 |
gaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttct |
7636514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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