View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_151 (Length: 295)
Name: NF0928_high_151
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_151 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 33175946 - 33176044
Alignment:
| Q |
148 |
ggaatcactcaattgtggatataaaatggtgcggatgaagaaaaccatgacaaataacaagtgtaaaatagagcatcaaaggtaagtgcagtatattgt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
33175946 |
ggaatcactcaattgtggatataaaatggtgcgaataaagaaaaccatgacaaataacaagtgtaaaacagagcatcaaaggtaagtgtagtatattgt |
33176044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 33175799 - 33175909
Alignment:
| Q |
10 |
aagaatatgcccattgatacactgaattgaagaaataatgtcnnnnnnn-tatagtattaggttttgctcataattttgtttgaagggttcaaccttaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33175799 |
aagaatatgcccattgatacactgaattgaagaaataatgtcaaaaaaaatatagtattaggttttgctcataattttgtttgaagggttcaaccttaaa |
33175898 |
T |
|
| Q |
109 |
caaacaacttg |
119 |
Q |
| |
|
|||| |||||| |
|
|
| T |
33175899 |
caaagaacttg |
33175909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 837 times since January 2019
Visitors: 6705