View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_152 (Length: 293)
Name: NF0928_high_152
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_152 |
 | |
|
| [»] scaffold0651 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0651 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 594 - 347
Alignment:
| Q |
36 |
atatatacacacctcgtcagggattggatatttagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatca |
135 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
594 |
atatatatatacctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatca |
495 |
T |
|
| Q |
136 |
tccattggcagtgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacac |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
494 |
tccattggcagtgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcatac |
395 |
T |
|
| Q |
236 |
cactcaacaatggatgacactctcttctcatctttctttctttctgtg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394 |
cactcaacaatggatgacactctcttctcatctttctttctttctgtg |
347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 276
Target Start/End: Original strand, 8154 - 8384
Alignment:
| Q |
46 |
acctcgtcagggattggatatttagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggca |
145 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8154 |
acctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggca |
8253 |
T |
|
| Q |
146 |
gtgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaa |
245 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8254 |
atgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaa |
8353 |
T |
|
| Q |
246 |
tggatgacactctcttctcatctttctttct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8354 |
tggatgacactctcttctcatctttctttct |
8384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 31330682 - 31330435
Alignment:
| Q |
36 |
atatatacacacctcgtcagggattggatatttagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatca |
135 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330682 |
atatatatatacctcgtcagggattggatatttagaagcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatca |
31330583 |
T |
|
| Q |
136 |
tccattggcagtgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacac |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31330582 |
tccattggcagtgaagggaacattacttcacatatgcttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcatac |
31330483 |
T |
|
| Q |
236 |
cactcaacaatggatgacactctcttctcatctttctttctttctgtg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330482 |
cactcaacaatggatgacactctcttctcatctttctttctttctgtg |
31330435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 276
Target Start/End: Complemental strand, 31315543 - 31315313
Alignment:
| Q |
46 |
acctcgtcagggattggatatttagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggca |
145 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31315543 |
acctcgtcagggattggatacatagaagcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggca |
31315444 |
T |
|
| Q |
146 |
gtgaagggaacataacttcacatatgcttgtgagtgactccatctcggccacagaaaacccatgtttgtatttgcgattctctctcacaccactcaacaa |
245 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31315443 |
atgaaggcaacacaacttcacatatgcttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaa |
31315344 |
T |
|
| Q |
246 |
tggatgacactctcttctcatctttctttct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31315343 |
tggatgacactctcttctcatctttctttct |
31315313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1411 times since January 2019
Visitors: 6712