View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_157 (Length: 290)

Name: NF0928_high_157
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_157
NF0928_high_157
[»] chr7 (7 HSPs)
chr7 (31-276)||(25706075-25706316)
chr7 (38-107)||(2351083-2351152)
chr7 (125-254)||(21471412-21471541)
chr7 (38-106)||(24596963-24597031)
chr7 (42-80)||(5214035-5214073)
chr7 (45-103)||(5312752-5312810)
chr7 (38-106)||(8308991-8309059)
[»] chr8 (6 HSPs)
chr8 (119-278)||(41505859-41506017)
chr8 (125-249)||(16052648-16052772)
chr8 (38-106)||(14424772-14424840)
chr8 (38-106)||(28260249-28260317)
chr8 (38-106)||(28074600-28074668)
chr8 (38-106)||(31436566-31436634)
[»] chr4 (4 HSPs)
chr4 (36-106)||(31859858-31859928)
chr4 (31-107)||(20044264-20044340)
chr4 (37-106)||(16442217-16442286)
chr4 (52-108)||(30624951-30625007)
[»] chr6 (5 HSPs)
chr6 (46-106)||(13835688-13835748)
chr6 (222-270)||(8322597-8322645)
chr6 (38-106)||(9943109-9943177)
chr6 (31-106)||(13830784-13830862)
chr6 (220-276)||(13831253-13831309)
[»] chr3 (2 HSPs)
chr3 (36-114)||(21813565-21813644)
chr3 (38-106)||(26387804-26387872)
[»] chr2 (5 HSPs)
chr2 (124-182)||(29769414-29769472)
chr2 (31-114)||(32703887-32703970)
chr2 (38-106)||(18236262-18236330)
chr2 (38-106)||(19541124-19541192)
chr2 (35-107)||(31450043-31450115)
[»] chr1 (2 HSPs)
chr1 (37-108)||(13807711-13807782)
chr1 (31-106)||(15416926-15417001)
[»] chr5 (1 HSPs)
chr5 (38-106)||(26070561-26070629)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 25706316 - 25706075
Alignment:
31 catgaggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgattagagaagataattaattatacttt 130  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| |    ||||||    
25706316 catgaggtgtcttgtttttccgaattacaagatttagcaacaaaaagacttaaaacacctatggagttgcatcattagaaaagataatca----tacttt 25706221  T
131 caaccacgttcaattccaagacacatgcatgtatatcctaaattcagtggggttggtgaagacattctacacacttcaatcattatgtaattgtaccttg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||| |||||    
25706220 caaccacgttcaattccaagacacatgcatgtatatcctaaattcagtgaggttggtcaagacattctacatacttcagtcattatgtaattgtgccttg 25706121  T
231 ctatgtatttgaagcaattataaacggtcattcaaaatcagtatta 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
25706120 ctatgtatttgaagcaattataaacggtcattcaaagtcagtatta 25706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 2351152 - 2351083
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatta 107  Q
    |||||| |||| |||||||||| |||||||||| |||||||||||| ||||||||  ||| |||||||||    
2351152 tgtcttctttttctgaattacacgatttatcaataaaaagacttaagacacctataaagtcgcatgatta 2351083  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 21471541 - 21471412
Alignment:
125 tactttcaaccacgttcaattccaagacacatgcatgtatatcctaaattcagtggggttggtgaagacattctacacacttcaatcattatgtaattgt 224  Q
    ||||||||||||||| ||||||||||| ||||| |||| | |||||||| || ||||| |||| ||| ||||   || ||| || || | |||| |||||    
21471541 tactttcaaccacgtacaattccaagatacatgtatgtgtctcctaaatccaatggggctggtcaaggcatttgccatactccagtcgtcatgtgattgt 21471442  T
225 accttgctatgtatttgaagcaattataaa 254  Q
    |||||||||||   ||||||||||| ||||    
21471441 accttgctatgagattgaagcaattctaaa 21471412  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 24596963 - 24597031
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||||||||||| || ||||| ||||| |||  ||||||||||||||||||||  |||||||||||||    
24596963 tgtcttgttttgccgatttacacgatttctcactaaaaagacttaaaacacctacggagttgcatgatt 24597031  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 5214035 - 5214073
Alignment:
42 ttgttttgctgaattacaagatttatcaacaaaaagact 80  Q
    |||||||||||||||||| |||||||||| |||||||||    
5214035 ttgttttgctgaattacatgatttatcaataaaaagact 5214073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 5312752 - 5312810
Alignment:
45 ttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatg 103  Q
    |||||| || ||||| |||||||||  ||||||||| ||||||||||| ||||||||||    
5312752 ttttgccgatttacatgatttatcactaaaaagactcaaaacacctatggagttgcatg 5312810  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 8308991 - 8309059
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||||||| ||||| ||||| | |  ||||||||| ||||||  ||| |||||||||||||    
8308991 tgtcttgttttgctgatttacatgatttcttactaaaaagactcaaaacatgtatggagttgcatgatt 8309059  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 41505859 - 41506017
Alignment:
119 taattatactttcaaccacgttcaattccaagacacatgcatgtatatcctaaattcagtggggttggtgaagacattctacacacttcaatcattatgt 218  Q
    ||||||| ||| ||||||| || |||||||| ||||| | |||||| ||||||| ||||||||| |||| ||| |||| | || || ||| || | ||||    
41505859 taattatgcttccaaccacatttaattccaaaacacacgtatgtatctcctaaagtcagtggggatggttaaggcatt-tgcagacatcagtcgtaatgt 41505957  T
219 aattgtaccttgctatgtatttgaagcaattataaacggtcattcaaaatcagtattatc 278  Q
    |||||||  |||||||| ||||||||||||| |||||  ||||| ||| |||| ||||||    
41505958 aattgtattttgctatgaatttgaagcaattttaaacattcatttaaagtcagcattatc 41506017  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 16052648 - 16052772
Alignment:
125 tactttcaaccacgttcaattccaagacacatgcatgtatatcctaaattcagtggggttggtgaagacattctacacacttcaatcattatgtaattgt 224  Q
    ||||||||||||| | ||||||||||| ||  | |||||  |||||||   |||||||||||| ||| ||||   |||||||||||| | |||| |||||    
16052648 tactttcaaccacatacaattccaagatacgcgtatgtacctcctaaagctagtggggttggtcaaggcatttgccacacttcaatcgtcatgtgattgt 16052747  T
225 accttgctatgtatttgaagcaatt 249  Q
    |||||||||||   |||||||||||    
16052748 accttgctatgagattgaagcaatt 16052772  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 14424772 - 14424840
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||||||||||| || ||||| ||||| |||  ||||| || |||||||||||| |||||||||||||    
14424772 tgtcttgttttgccgatttacatgatttctcactaaaaaaacctaaaacacctatggagttgcatgatt 14424840  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 28260249 - 28260317
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||||||| ||||| ||||| |||  ||||||||| ||||||||||| ||||  |||||||    
28260249 tgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatggagtctcatgatt 28260317  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 28074668 - 28074600
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||||  | ||||| ||||| |||  |||||||||  |||||||||| |||||||||||||    
28074668 tgtcttgttttgcatatttacatgatttctcactaaaaagactcgaaacacctatggagttgcatgatt 28074600  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 31436634 - 31436566
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||| ||| ||||| ||||| |||  ||||||| | |||||||||||  ||||||||||||    
31436634 tgtcttgttttgttgatttacatgatttctcactaaaaagattcaaaacacctatgtagttgcatgatt 31436566  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 31859858 - 31859928
Alignment:
36 ggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||||||||| ||||| ||||| |||  ||||||||| |||||||||||  ||||||||||||    
31859858 ggtgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatgcagttgcatgatt 31859928  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 20044340 - 20044264
Alignment:
31 catgaggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatta 107  Q
    |||| ||||||||| ||| |||||||||| ||||| |||| ||||||||| |||| || ||| ||||||||||||||    
20044340 catgtggtgtcttgctttactgaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgatta 20044264  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 16442217 - 16442286
Alignment:
37 gtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||| |||||| | |||||||| |||||||||  ||||||| | ||||||| ||| |||||||||||||    
16442217 gtgtcatgttttaccgaattacatgatttatcattaaaaagagtcaaaacacttatggagttgcatgatt 16442286  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 30625007 - 30624951
Alignment:
52 gaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgattag 108  Q
    |||||||| ||||| |||| ||||||||| |||||||||||  | ||||||||||||    
30625007 gaattacatgatttttcaataaaaagactcaaaacacctatgaaattgcatgattag 30624951  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 13835748 - 13835688
Alignment:
46 tttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||| ||  |||||||||    
13835748 tttgccgaattacaagatttatcaataaaaagacttaaaacacatatggaactgcatgatt 13835688  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 8322645 - 8322597
Alignment:
222 tgtaccttgctatgtatttgaagcaattataaacggtcattcaaaatca 270  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||||||||    
8322645 tgtaccttgctatgaatttgaaacaattctaaacggacattcaaaatca 8322597  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 9943109 - 9943177
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||||||||| | || ||||| ||||| |||| ||||| ||| ||||||||||| |||||||||||||    
9943109 tgtcttgtttttccgatttacatgatttctcaataaaaatactaaaaacacctatggagttgcatgatt 9943177  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 13830784 - 13830862
Alignment:
31 catgaggtgtcttgttttgctgaattacaaga---tttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||| ||||||||| |||||  ||||||||||   |||||||||||||||||| ||| ||||||| ||  |||||||||    
13830784 catgtggtgtcttggtttgccaaattacaagaatatttatcaacaaaaagactcaaatcacctatggaactgcatgatt 13830862  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 13831253 - 13831309
Alignment:
220 attgtaccttgctatgtatttgaagcaattataaacggtcattcaaaatcagtatta 276  Q
    ||||||||| | | || |||||||||||||||||||| ||||||||| ||| |||||    
13831253 attgtacctggttttgaatttgaagcaattataaacgttcattcaaagtcaatatta 13831309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 21813644 - 21813565
Alignment:
36 ggtgtcttgttttgctgaattacaagatttatcaa-caaaaagacttaaaacacctattgagttgcatgattagagaaga 114  Q
    |||||||||||||||||||||||| | ||||||||  ||||||||| |||| ||||||  |||||||||| ||| |||||    
21813644 ggtgtcttgttttgctgaattacatggtttatcaataaaaaagactcaaaatacctatgtagttgcatgactagggaaga 21813565  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 26387804 - 26387872
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||| ||||| ||||| ||||| |||  ||||||||| |||||| |||| |||||||||||||    
26387804 tgtcttgtttagctgatttacatgatttctcattaaaaagactcaaaacatctatggagttgcatgatt 26387872  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 29769472 - 29769414
Alignment:
124 atactttcaaccacgttcaattccaagacacatgcatgtatatcctaaattcagtgggg 182  Q
    ||||||||||| || ||||||||||| ||||||| |||||| ||||||| |||||||||    
29769472 atactttcaactacattcaattccaaaacacatgtatgtatctcctaaaatcagtgggg 29769414  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 32703887 - 32703970
Alignment:
31 catgaggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgattagagaaga 114  Q
    |||||| ||||||||||||| ||||||||  ||||||||| ||||||| | ||||||| |||  ||||| ||  ||||||||||    
32703887 catgagatgtcttgttttgcggaattacataatttatcaataaaaagattcaaaacacttatgaagttgtatagttagagaaga 32703970  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 18236262 - 18236330
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    ||||||||||||| || ||||| ||||| |||  ||||||||| |||| || ||| |||||||||||||    
18236262 tgtcttgttttgccgagttacatgatttctcactaaaaagactcaaaatacttatggagttgcatgatt 18236330  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 19541192 - 19541124
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||| |||||| || ||||| ||||| |||  | ||||||| ||||||||||| |||||||||||||    
19541192 tgtcttattttgccgatttacatgatttctcactagaaagactcaaaacacctatggagttgcatgatt 19541124  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 31450115 - 31450043
Alignment:
35 aggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatta 107  Q
    |||||||||  ||||| |||| ||| |||||||||| ||||| ||| |||||||||||  |||||||| ||||    
31450115 aggtgtctttctttgccgaatcacatgatttatcaataaaaatactcaaaacacctataaagttgcataatta 31450043  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 13807711 - 13807782
Alignment:
37 gtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgattag 108  Q
    |||||||| ||||||||||||||  | ||| |||| |||||||| |||||| ||||  ||||||||||||||    
13807711 gtgtcttgctttgctgaattacatcacttaacaactaaaagactcaaaacaactatgaagttgcatgattag 13807782  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 15416926 - 15417001
Alignment:
31 catgaggtgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||| ||||||||| ||||| |||||||| |||||  | | ||||||||| |||||||||||  ||||||||||||    
15416926 catgtggtgtcttgctttgccgaattacatgatttgactataaaaagactcaaaacacctatacagttgcatgatt 15417001  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 26070629 - 26070561
Alignment:
38 tgtcttgttttgctgaattacaagatttatcaacaaaaagacttaaaacacctattgagttgcatgatt 106  Q
    |||||||||||||  | ||||| ||||| |||  ||||||||| ||||||| ||| |||||||||||||    
26070629 tgtcttgttttgccaatttacatgatttctcactaaaaagactcaaaacacttatggagttgcatgatt 26070561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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