View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_161 (Length: 287)
Name: NF0928_high_161
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_161 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33825181 - 33824909
Alignment:
| Q |
1 |
tcctttgatatcccaacaccaaccacaaggttactcattcgtccacaaatacatcatatatatcttctttgaagagaaccaaaacatctaacatatttgg |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825181 |
tcctttgatatctcaaccccaaccacaaggtgactcattcgtccacaaatacatcatatatatcttctttgaagagaaccaaaacatctaacatatttgg |
33825082 |
T |
|
| Q |
101 |
ttacctctaacatatgctttagttagaagttaaacaatatatataattaattgttaggggtttgcaataaactgggacttaagcaagacaaacataaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33825081 |
ttacctctaacatatgctttagttagaagttaaacaatatatataattaattgttaggggtttgaaataaactgggacttaagcaagacaaacataaaat |
33824982 |
T |
|
| Q |
201 |
taagaaacttagcacctaataacaagaattcaaaatagactaccttatacatatataatacaattttaaactctctg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33824981 |
taagaaacttagcacctaataacaagaattcaaaatagactaccttatac----ataatacaattttaaactctctg |
33824909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1429 times since January 2019
Visitors: 6712