View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_175 (Length: 263)
Name: NF0928_high_175
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_175 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 21907455 - 21907525
Alignment:
| Q |
181 |
actaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttactaatgttaggttcccaaa |
251 |
Q |
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| T |
21907455 |
actaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttgctaacgttaggttcgcaaa |
21907525 |
T |
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 26556794 - 26556891
Alignment:
| Q |
153 |
gaaaattgatagtagtacttaaaatttgactaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttactaatgttaggttcccaaa |
251 |
Q |
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|||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||| | |||||||||| ||||||||||| |||| |
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| T |
26556794 |
gaaaatcgatagtagtacttaaaacttgaataaatacggcttgtgcttaaaaaatg-acaaatataattggttgagtttactgatgttaggttcgcaaa |
26556891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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