View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_183 (Length: 257)
Name: NF0928_high_183
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_183 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 47320444 - 47320244
Alignment:
| Q |
17 |
tccattttttaacaactattgaatgtgattcattctgtttccaaatcttatagtgaaaattataaacatctttcttgtattatgtaaagacagaaagatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |
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| T |
47320444 |
tccattttttaacaactattgaatgtgattcattctgtttccaaatcttatagtgaaaattataaacatctttcctgtattat-ttaagacagaaagatc |
47320346 |
T |
|
| Q |
117 |
gaaaatttcaagatgagttgtgctacgaaaataccatctgattcaatctctatgcacttgatgtaaa-tgtatagtttaaagaattcgcactcaacaaag |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47320345 |
gaaaatttcaagatgagttgtgctatgaaaataccatctgattcaatctctatgcacttgatgtaaagtgtatagtttaaagaattcgcactcaacaaag |
47320246 |
T |
|
| Q |
216 |
ta |
217 |
Q |
| |
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|| |
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|
| T |
47320245 |
ta |
47320244 |
T |
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