View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_193 (Length: 254)
Name: NF0928_high_193
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_193 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 36231099 - 36230874
Alignment:
| Q |
29 |
atgctccgcttcttgagatccttattgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaagataacgaacaagctggatctgactccaa |
128 |
Q |
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| T |
36231099 |
atgctccgcttcttgagatccttgttgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaagataacgaacaagctggatctgactccaa |
36231000 |
T |
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| Q |
129 |
aaatgatatgatatttgcaaatcttagagatctttgcctttatggtatgccaaaactagtgagcatccacaggagagctttggattttccttccctaaaa |
228 |
Q |
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| T |
36230999 |
aaatgatatgatatttgcaaatcttacagatctttgcctttatggtatgccaaaactagtgagcatccacaagagagctttggattttccttccctaaaa |
36230900 |
T |
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| Q |
229 |
cgtattaaggtaactgattgccccaa |
254 |
Q |
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| T |
36230899 |
cgtattaaggtaactgattgccccaa |
36230874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 36205663 - 36205583
Alignment:
| Q |
174 |
tatgccaaaactagtgagcatccacaggagagctttggattttccttccctaaaacgtattaaggtaactgattgccccaa |
254 |
Q |
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| T |
36205663 |
tatgccaaaactagtgagcatccacaagagagctttggattttccttccttaaaacgttttgaggtagctaaatgccccaa |
36205583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 36205790 - 36205704
Alignment:
| Q |
29 |
atgctccgcttcttgagatccttattgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaagataacgaacaagctg |
115 |
Q |
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| T |
36205790 |
atgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaagatgacgagcaagctg |
36205704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 25475247 - 25475453
Alignment:
| Q |
29 |
atgctccgcttcttgagatccttattgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaagataacgaacaagctggatctgactccaa |
128 |
Q |
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| T |
25475247 |
atgctccgcttctcgaggtcctttctgtttctgattgttattcaattgaagaggtggtgaaagaagctaaagatggtgaacaagctggctatgactccaa |
25475346 |
T |
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| Q |
129 |
aaatgatatgatatttgcaaatcttagagatctttgcctttatggtatgccaaaactagtgagcatccacaggagagctttggattttccttccctaaaa |
228 |
Q |
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| T |
25475347 |
caatgacatgatattcaaaaatcttaaagatctttgccttcataatatgcgaaatctagtgagcatccacaagagagctttgaattttccttccctaaaa |
25475446 |
T |
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| Q |
229 |
cgtatta |
235 |
Q |
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| T |
25475447 |
cgtatta |
25475453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 29133910 - 29133796
Alignment:
| Q |
91 |
gaaggtaaagataacgaacaagctggatctgactccaaaaatgatatgatatttgcaaatcttagagatctttgcctttatggtatgccaaaactagtga |
190 |
Q |
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| T |
29133910 |
gaagctaaagatgaggaacaagctggctatcactccgacaatgataatatattcacaaatcttaaggttcttcggctttttggtatgcaaaaactagtga |
29133811 |
T |
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| Q |
191 |
gcatccacaggagag |
205 |
Q |
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| T |
29133810 |
gcatccacaagagag |
29133796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 9765600 - 9765375
Alignment:
| Q |
29 |
atgctccgcttcttgagatccttattgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaagataacgaacaagctggatctgactccaa |
128 |
Q |
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|||||||||||||||||| ||| ||||| | |||| |||||||||||| ||||||||||||| ||||||| |||| ||||||| | ||||||||| |
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| T |
9765600 |
atgctccgcttcttgagaagcttgttgtttcttcttgtagttcaattgaagaagtggtgaaagaagttaaagatgacgagcaagctgactatgactccaa |
9765501 |
T |
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| Q |
129 |
aaatgatatgatatttgcaaatcttagagatctttgcctttatggtatgccaaaactagtgagcatccacaggagagctttggattttccttccctaaaa |
228 |
Q |
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| T |
9765500 |
caatgatattatattcagaaatcttaaagttcttcgcctttctaatatgtctaagctagtgagcatccacaagagagctttggattttccttccctaaaa |
9765401 |
T |
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| Q |
229 |
cgtattaaggtaactgattgccccaa |
254 |
Q |
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| T |
9765400 |
cgtattagggtatttgagtgccccaa |
9765375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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