View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_194 (Length: 254)
Name: NF0928_high_194
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_194 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 770330 - 770155
Alignment:
| Q |
1 |
atgtctctccaacaatgaatatatgcaataggatcctaccttggctatcatgtggtaannnnnnngctttaatgatggatttactgactggagtcttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
770330 |
atgtctctccaacaatgaatatatgcaataggatcctaccttggctatcatgtggtgatttttttgctttaatgatggatttactgactggagtcttggt |
770231 |
T |
|
| Q |
101 |
atcataggaaccatgtaacagttgtcaattaagcagcctgtgatagaaatgatgcagaatttcgtcccatcttttt |
176 |
Q |
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| T |
770230 |
atcataggaaccatgtaacagttgtcaattaagcagcctgtgatagaaatgatgcagaatttcgtcccatcttttt |
770155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 9503239 - 9503068
Alignment:
| Q |
8 |
tccaacaatgaatatatgcaataggatcctacc---ttggctatcatgtggtaannnnnnngctttaatgatggatttactgactggagtcttggtatca |
104 |
Q |
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||||||||||||| ||||||||| |||||||| |||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||||| |
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| T |
9503239 |
tccaacaatgaatctatgcaatatgatcctacaatgttggctatcatgtggtgatgtttttgcttttatgatggatttactgattggagtctaggtatca |
9503140 |
T |
|
| Q |
105 |
taggaaccatgtaacagttgtcaattaagcagcctgtgatagaaatgatgcagaatttcgtcccatcttttt |
176 |
Q |
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|||||||||||| |||||| ||||||||||| ||| ||| |||||||||||||||| ||||||||||||| |
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| T |
9503139 |
taggaaccatgtcggagttgtaaattaagcagcttgtaatataaatgatgcagaatttagtcccatcttttt |
9503068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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