View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_196 (Length: 253)

Name: NF0928_high_196
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_196
NF0928_high_196
[»] chr8 (17 HSPs)
chr8 (1-142)||(40118098-40118239)
chr8 (18-158)||(38172754-38172899)
chr8 (15-123)||(13541421-13541530)
chr8 (15-123)||(13682943-13683052)
chr8 (15-154)||(38699721-38699860)
chr8 (39-153)||(18881850-18881965)
chr8 (15-154)||(43115191-43115330)
chr8 (15-102)||(4072236-4072323)
chr8 (15-102)||(41323190-41323277)
chr8 (15-102)||(21441602-21441689)
chr8 (15-150)||(41570409-41570544)
chr8 (47-157)||(12491566-12491678)
chr8 (189-243)||(38172699-38172753)
chr8 (39-153)||(1233564-1233675)
chr8 (39-153)||(13640920-13641031)
chr8 (25-54)||(18881806-18881835)
chr8 (55-92)||(33613707-33613744)
[»] chr7 (19 HSPs)
chr7 (2-157)||(34659348-34659505)
chr7 (15-152)||(758879-759016)
chr7 (15-132)||(37202791-37202909)
chr7 (15-152)||(46211636-46211773)
chr7 (15-154)||(29715802-29715941)
chr7 (15-154)||(48609062-48609201)
chr7 (15-102)||(39719929-39720016)
chr7 (47-157)||(13465458-13465570)
chr7 (47-157)||(28491315-28491427)
chr7 (15-152)||(83590-83728)
chr7 (39-152)||(20926818-20926929)
chr7 (83-154)||(25592168-25592240)
chr7 (1-51)||(14046995-14047046)
chr7 (98-157)||(14047068-14047127)
chr7 (1-51)||(14357025-14357076)
chr7 (98-157)||(14357098-14357157)
chr7 (80-154)||(37049140-37049214)
chr7 (47-132)||(25439574-25439658)
chr7 (15-51)||(25592125-25592161)
[»] chr4 (15 HSPs)
chr4 (18-157)||(52628265-52628409)
chr4 (1-123)||(54165954-54166079)
chr4 (15-123)||(8745701-8745810)
chr4 (25-153)||(21790752-21790882)
chr4 (15-102)||(43892531-43892618)
chr4 (15-123)||(48841154-48841261)
chr4 (47-154)||(6016799-6016907)
chr4 (15-154)||(48861977-48862116)
chr4 (47-153)||(2407155-2407263)
chr4 (47-154)||(22786028-22786136)
chr4 (189-243)||(52628411-52628465)
chr4 (189-243)||(54165869-54165923)
chr4 (17-153)||(17815943-17816074)
chr4 (77-150)||(42318962-42319035)
chr4 (198-253)||(11950664-11950720)
[»] scaffold0186 (1 HSPs)
scaffold0186 (15-153)||(22694-22833)
[»] chr5 (11 HSPs)
chr5 (1-154)||(16908611-16908765)
chr5 (15-123)||(34034073-34034182)
chr5 (15-154)||(17695867-17696006)
chr5 (15-102)||(13517548-13517635)
chr5 (15-102)||(17768985-17769072)
chr5 (15-153)||(41640026-41640164)
chr5 (4-103)||(19948859-19948958)
chr5 (47-154)||(40528147-40528255)
chr5 (1-61)||(22099212-22099273)
chr5 (39-151)||(14521642-14521753)
chr5 (15-153)||(40360995-40361132)
[»] scaffold0002 (1 HSPs)
scaffold0002 (10-141)||(428333-428464)
[»] chr1 (18 HSPs)
chr1 (15-154)||(11142660-11142799)
chr1 (15-102)||(1600595-1600682)
chr1 (15-123)||(44961438-44961547)
chr1 (15-154)||(10406145-10406284)
chr1 (15-154)||(19313369-19313508)
chr1 (15-153)||(10177885-10178023)
chr1 (15-102)||(15757726-15757813)
chr1 (58-158)||(33240845-33240946)
chr1 (47-157)||(30950794-30950906)
chr1 (15-102)||(10620113-10620200)
chr1 (15-154)||(23614619-23614758)
chr1 (47-154)||(29799042-29799150)
chr1 (1-50)||(33241370-33241420)
chr1 (39-153)||(46515604-46515716)
chr1 (25-103)||(47367859-47367937)
chr1 (39-152)||(21972427-21972538)
chr1 (16-62)||(52111063-52111109)
chr1 (64-150)||(28403123-28403210)
[»] chr6 (11 HSPs)
chr6 (15-152)||(29363504-29363641)
chr6 (10-149)||(29486438-29486577)
chr6 (47-157)||(1780628-1780740)
chr6 (15-92)||(34729825-34729902)
chr6 (25-130)||(24428798-24428907)
chr6 (39-152)||(904013-904124)
chr6 (83-154)||(22956432-22956504)
chr6 (15-51)||(22956511-22956547)
chr6 (15-51)||(23831845-23831881)
chr6 (83-154)||(23831888-23831960)
chr6 (39-153)||(8559901-8560013)
[»] scaffold0110 (1 HSPs)
scaffold0110 (18-102)||(6920-7004)
[»] chr3 (15 HSPs)
chr3 (15-154)||(17652944-17653083)
chr3 (15-102)||(21295982-21296069)
chr3 (15-102)||(46823854-46823941)
chr3 (47-157)||(40763813-40763925)
chr3 (15-154)||(16152280-16152419)
chr3 (17-153)||(29648391-29648530)
chr3 (47-157)||(3458062-3458173)
chr3 (47-154)||(20843176-20843284)
chr3 (15-83)||(11027911-11027979)
chr3 (39-153)||(35106481-35106593)
chr3 (10-51)||(38171425-38171466)
chr3 (15-51)||(11906662-11906698)
chr3 (83-154)||(52403266-52403338)
chr3 (15-51)||(52403345-52403381)
chr3 (39-153)||(19795621-19795732)
[»] chr2 (8 HSPs)
chr2 (25-131)||(42799168-42799275)
chr2 (47-157)||(16546354-16546466)
chr2 (47-157)||(39070180-39070292)
chr2 (15-153)||(4435242-4435380)
chr2 (47-154)||(45655935-45656043)
chr2 (16-75)||(38881702-38881761)
chr2 (15-63)||(26180642-26180690)
chr2 (47-132)||(37614591-37614680)
[»] scaffold0005 (1 HSPs)
scaffold0005 (15-154)||(292225-292364)
[»] scaffold0481 (1 HSPs)
scaffold0481 (15-118)||(6672-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (15-49)||(778-812)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 40118098 - 40118239
Alignment:
Q  1 aattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca 100  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40118098 aattatagaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatggacaatgaatttattgcaaataatctattagtttaca 40118197  T
Q  101 ttgaaaatatattattaatctatctagtaaacactcaattat 142  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  40118198 ttgaaaatatattattaatctacctagtaaacactcaattat 40118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 38172899 - 38172754
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||| ||||||    
T  38172899 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaatgagtttattgcaaataacctattagtttacattggagaatacattatt 38172800  T
Q  117 aatc----tatctagtaaacactcaattatagataaaattggtttt 158  Q
    ||||    ||| |||||||||||||||||| |||||||||||||||    
T  38172799 aatctatatatttagtaaacactcaattatggataaaattggtttt 38172754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 13541530 - 13541421
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13541530 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13541431  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  13541430 attaatctat 13541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 13682943 - 13683052
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13682943 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13683042  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  13683043 attaatctat 13683052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 38699860 - 38699721
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  38699860 ttttcaacaataaaaattatcaagacaatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacatt 38699761  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| || ||||| ||| |||||||    
T  38699760 attaatctat-tattaaacagtctattattgatgaaattgg 38699721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 18881850 - 18881965
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactca 137  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| | ||||||| |||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  138 attatagataaaattg 153  Q
    ||||| ||||||||||    
T  18881950 attatggataaaattg 18881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 43115191 - 43115330
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  | ||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  43115191 ttttcaacaataaaaattatcaagacaatagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacatt 43115290  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  43115291 attaatctat-tattaaacagtcaattattgatgaaattgg 43115330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 4072323 - 4072236
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  4072323 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 4072236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 41323277 - 41323190
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  41323277 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataaactatttatttacatt 41323190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 21441689 - 21441602
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21441689 ttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21441602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 41570409 - 41570544
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatatta 114  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||   ||||||||| |||||||||| ||||| |||||| || |||| | |  |    
T  41570409 ttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagtaatgagtttcttgcaaataacctatttgtttaccttaaaaaaacaaca 41570508  T
Q  115 ttaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||| | ||||||| |||||||| |||||||    
T  41570509 ttaatctattttgtaaacaatcaattatggataaaa 41570544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 12491566 - 12491678
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  145 ataaaattggttt 157  Q
    ||| |||||||||    
T  12491666 atacaattggttt 12491678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 38172753 - 38172699
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  38172753 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 38172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 1233675 - 1233564
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 1233579  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  1233578 ttatggataaaattg 1233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 13641031 - 13640920
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 13640935  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  13640934 ttatggataaaattg 13640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 18881806 - 18881835
Alignment:
Q  25 taaaaattatcaagacaatagtcataaaca 54  Q
    ||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaaca 18881835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 33613707 - 33613744
Alignment:
Q  55 aattaaatggacaatgagtttattgcaaataatctatt 92  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctatt 33613744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 34659348 - 34659505
Alignment:
Q  2 attatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca 100  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  34659348 attatagagaaaacttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttaca 34659447  T
Q  101 -ttgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
     || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34659448 tttaaaaatacattattaatctatttagtaaacactcaattatagataaaattggttt 34659505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 758879 - 759016
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||| ||||||| | |||    
T  758879 ttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataatctatttatttacatttgaaaagacatt 758978  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  758979 attaatctat-tattaaacaaacaattattgatgaaatt 759016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 37202791 - 37202909
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacat-tgaaaatatatt 113  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||  ||||| | |||    
T  37202791 ttttcaacattaaaagttattaagacaatagtcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacatt 37202890  T
Q  114 attaatctatctagtaaac 132  Q
    |||||||||| ||||||||    
T  37202891 attaatctatttagtaaac 37202909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 46211773 - 46211636
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  46211773 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 46211674  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  46211673 attaatctat-tattaaacaaacaattattgatgaaatt 46211636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 29715941 - 29715802
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||| |||||| |||||  |||||| ||||||| | |||    
T  29715941 ttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacatt 29715842  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| || ||||| ||| |||||||    
T  29715841 attaatctat-tattaaacagtctattattgatgaaattgg 29715802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 48609201 - 48609062
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  48609201 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaacacatt 48609102  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48609101 attaatctat-tattaaacaaacaattattgatgaaattgg 48609062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 39719929 - 39720016
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  39719929 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 39720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 13465458 - 13465570
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  13465558 ataaaattggttt 13465570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 28491315 - 28491427
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatcta-ttagtttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| ||| |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  28491415 ataaaattggttt 28491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 83728 - 83590
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatgg-acaatgagtttattgcaaataatctattagtttaca-ttgaaaatatat 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    ||||||||||| ||| |||||| |||||  |||||| ||||||| | ||    
T  83728 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagtttcttgtaaataacctatttatttacatttgaaaagacat 83629  T
Q  113 tattaatctatctagtaaacactcaattatagataaaatt 152  Q
    ||||||||||| || ||||||  ||||||| ||| |||||    
T  83628 tattaatctat-tattaaacaaacaattattgatgaaatt 83590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 20926929 - 20926818
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||  ||||||  | || ||||||||| |||| | |||| |||||||| || |||||| ||||    
T  20926929 acaatagtcataatcaaattaaaaggacaataagttt-ttcaaaataacttgtttgtttacatt-aaaaaacattaataatctatttattaaacagtcaa 20926832  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  20926831 ttatggataaaatt 20926818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 25592168 - 25592240
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 25592240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14046995 - 14047046
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14046995 aattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 14047068 - 14047127
Alignment:
Q  98 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14047068 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14357025 - 14357076
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14357025 aattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 14357098 - 14357157
Alignment:
Q  98 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 157  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14357098 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14357157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 37049140 - 37049214
Alignment:
Q  80 caaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    ||||||| ||||| |||||||||||||| | ||||||||||| | || |||||| | ||||| | ||||||||||    
T  37049140 caaataacctatttgtttacattgaaaagacattattaatctttttattaaacagttaattacaaataaaattgg 37049214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 25439658 - 25439574
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaac 132  Q
    ||||||||||||||||||||| ||||||| |||||   || ||||| | |||||||| ||||| | ||||||||||||| ||||||||    
T  25439658 cataaacaaattaaatggacattgagtttcttgca---aacctatttgttttacattggaaaagacattattaatctatttagtaaac 25439574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 25592125 - 25592161
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25592125 ttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 52628265 - 52628409
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattatt 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  52628265 tcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaatgagtttattgcaaataacctattagtttacattggaaaatatattatt 52628364  T
Q  117 aatc----tatctagtaaacactcaattatagataaaattggttt 157  Q
    ||||    ||| ||||||||||||||||||  |||||| ||||||    
T  52628365 aatctatatatttagtaaacactcaattatttataaaactggttt 52628409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 54166079 - 54165954
Alignment:
Q  1 aattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagttta 98  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  54166079 aattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaatgagtttattgcaaataacctattagttta 54165980  T
Q  99 cattg-aaaatatattattaatctat 123  Q
    ||||| |||||| |||||||||||||    
T  54165979 cattgaaaaatacattattaatctat 54165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 8745810 - 8745701
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || | ||||| |||||  |||||| ||||||| | |||    
T  8745810 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacatt 8745711  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  8745710 attaatctat 8745701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 21790752 - 21790882
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgag--tttattgcaaataatctattagtttacattgaaaatatattattaatcta 122  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||  ||| |||||||||| |||||  ||||| | ||||| | ||||||||||||    
T  21790752 taaaaattattaagactatagtcataaacaaataaaatggacaatgagttttttttgcaaataacctatttatttacttggaaaagacattattaatcta 21790851  T
Q  123 tctagtaaacactcaattatagataaaattg 153  Q
      ||||||||| |||||||| || |||||||    
T  21790852 gttagtaaacaatcaattatggacaaaattg 21790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 43892618 - 43892531
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||| |||||||||| |||||  ||||||||    
T  43892618 ttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgtgcaatgagtttcttgcaaataacctatttatttacatt 43892531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 48841154 - 48841261
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||| |||| |||| |||||||||| |||||  |||||| ||||||| | |||    
T  48841154 ttttcaacaataaaaattatcaagacaa--gtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacatt 48841251  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  48841252 attaatctat 48841261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 6016907 - 6016799
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||| ||| ||||||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  |||||||| ||    
T  6016907 cataaacaatttaaatgtacattgagtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgga 6016808  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  6016807 taaaattgg 6016799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 48861977 - 48862116
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  48861977 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 48862076  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48862077 attaatctat-tattaaacagacaattattgatgaaattgg 48862116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 2407155 - 2407263
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg--aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||||  |||| | ||||||||||||| ||||||||  |||||||| |    
T  2407155 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattg 2407254  T
Q  145 ataaaattg 153  Q
    |||||||||    
T  2407255 ataaaattg 2407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 22786028 - 22786136
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||  || ||||| ||    
T  22786028 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatgga 22786127  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  22786128 taaaattgg 22786136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 52628411 - 52628465
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  52628411 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 52628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 54165923 - 54165869
Alignment:
Q  189 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 243  Q
    |||||||  |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  54165923 ttgaaatacattttgtccaacttttctaataactattgtcaatttttatcctttg 54165869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 17816074 - 17815943
Alignment:
Q  17 ttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa-taat---ctattagtttacattgaaaatatat 112  Q
    ||||||||||||||||||||||||| ||||         ||| ||||| |||||||||| ||||||| |||    ||||| ||||||||| |||| | ||    
T  17816074 ttcaacaataaaaattatcaagacagtagt---------attcaatgggcaatgagtttcttgcaaaataacttactatttgtttacattaaaaaaacat 17815984  T
Q  113 tattaatctatctagtaaacactcaattatagataaaattg 153  Q
    ||||||||||| | ||||||| |||| ||| ||||||||||    
T  17815983 tattaatctattttgtaaacaatcaactatggataaaattg 17815943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 42319035 - 42318962
Alignment:
Q  77 ttgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||||  ||||  ||||||||||||  ||||||||||||||| |||||||||   |||||| |||||||    
T  42319035 ttgcaaataacatatttatttacattgaaaggatattattaatctatttagtaaacataaaattatggataaaa 42318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 11950664 - 11950720
Alignment:
Q  198 attttgtcgaacttttctaa-tagctatcgtcaatttttatcctttgctactcctct 253  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| |||| |||| ||||    
T  11950664 attttgtccaacttttctaaatagctattgtcaatttttatcatttgttactgctct 11950720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 22694 - 22833
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatatt 113  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||| ||| |||||||||| ||||| ||||||||| ||||| | |||    
T  22694 ttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggcattgaatttcttgcaaataacctatttgtttacattggaaaaaacatt 22793  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| | ||||||| ||||||||  |||||||||    
T  22794 attaatctattttgtaaacaatcaattatgaataaaattg 22833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 16908765 - 16908611
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttac 99  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| || ||| ||| ||||| ||||||    
T  16908765 aattatagagaaaacttttcaacgataaaaattattaagacaatagttataaataaattaaatggacaat-agtttctttcaagtaacctatttgtttac 16908667  T
Q  100 attg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||| |||||| ||||    
T  16908666 attgaaaaatacattattaatctatttagtaaacagtcaattatggataaatttgg 16908611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 34034073 - 34034182
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  34034073 ttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagacatt 34034172  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  34034173 attaatctat 34034182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 17696006 - 17695867
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  17696006 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaaaacatt 17695907  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  17695906 attaatctat-tattaaacagtcaattattgatgaaattgg 17695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 13517548 - 13517635
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  13517548 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 13517635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 17769072 - 17768985
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  17769072 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 17768985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 41640164 - 41640026
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  41640164 ttttcaacaataaaaatgatcaagaaaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacatt 41640065  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || ||||||  ||||||| ||| ||||||    
T  41640064 attaatctat-tattaaacaagcaattattgatgaaattg 41640026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 19948958 - 19948859
Alignment:
Q  4 tatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg 103  Q
    |||||||||||   | |||||| |||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| | ||||||||||    
T  19948958 tatagaaaaaaaaattaacaattaaaattatcaagacaatagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacattg 19948859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 40528255 - 40528147
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    |||||||||||||| |||| | ||||||| || ||||||| ||||| |||||||||| |||| | |||||||||| || ||||||||  |||| ||||||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  40528155 taaaattgg 40528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22099212 - 22099273
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaa 61  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  22099212 aattatagagaaaacttttcaacaataaaagttatcaagacaatagtcataatcaaattaaa 22099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 14521642 - 14521753
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| | ||||| ||||  ||||||||||  | || |||||||||||||| | |||| |||| ||| || |||||| ||||    
T  14521642 acaatagttataaacaaattaaaagtacaataagttg-ttgcaaataacttgtttgtttacattgaaaaaacattaataatatatttattaaacagtcaa 14521740  T
Q  139 ttatagataaaat 151  Q
    |||| ||||||||    
T  14521741 ttatggataaaat 14521753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 40361132 - 40360995
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatatt 113  Q
    |||||||||| |||||||||||| | ||||||||   |||  |||||| |  ||||||||| |||||||||| ||||| ||||| ||   |||| | |||    
T  40361132 ttttcaacaacaaaaattatcaacaaaatagtcagggaca--ttaaataggaaatgagtttcttgcaaataacctatttgtttagatcataaaagacatt 40361035  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| | ||||||| |||||||| ||||||||||    
T  40361034 attaatctattttgtaaacagtcaattatggataaaattg 40360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 428464 - 428333
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaat 108  Q
    |||| ||||||||  |||||||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||| | ||||||| ||||||    
T  428464 aaaacttttcaacggtaaaaattattaagacaatagtaataaacaaattaaatggacaat-agtttcttacaaataatctatttgcttacattggaaaat 428366  T
Q  109 atattattaatctatctagtaaacactcaatta 141  Q
    | ||||||||||||| ||||||||| |||||||    
T  428365 acattattaatctatttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 11142660 - 11142799
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||| ||||| |||||  |||||| ||||||| | |||    
T  11142660 ttttcaacaataaaaattatcaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacatt 11142759  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| |||||||||||    
T  11142760 attaatctat-tattaaacagacaattattgataaaattgg 11142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 1600682 - 1600595
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  ||||||||    
T  1600682 ttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatt 1600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 44961438 - 44961547
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| | ||     
T  44961438 ttttcaacagtaaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatc 44961537  T
Q  114 attaatctat 123  Q
    ||||||||||    
T  44961538 attaatctat 44961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 10406284 - 10406145
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatatt 113  Q
    ||||||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||||| |||||||||| |||||  |||||||| ||||| | |||    
T  10406284 ttttcaacaataataattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacatt 10406185  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  10406184 attaatctat-tattaaacagtcaattattgatgaaattgg 10406145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 19313369 - 19313508
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| || | ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  19313369 ttttcaacaataaaaattatcaaaacaatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacatt 19313468  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  19313469 attaatctat-tattaaacagtcaattattgatgaaattgg 19313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 10177885 - 10178023
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||  ||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  10177885 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacatt 10177984  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || |||||| |||||||| ||| ||||||    
T  10177985 attaatctat-tattaaacagtcaattattgatgaaattg 10178023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 15757726 - 15757813
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  15757726 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 15757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 33240946 - 33240845
Alignment:
Q  58 taaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattggtt 156  Q
    |||||||||| ||| ||||||| |||| | |||||||||||||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattggtt 33240847  T
Q  157 tt 158  Q
    ||    
T  33240846 tt 33240845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 30950906 - 30950794
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacattg-aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  30950806 ataaaattggttt 30950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 10620113 - 10620200
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||  ||||||||    
T  10620113 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgaaaataacctatttatttacatt 10620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 23614619 - 23614758
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  23614619 ttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 23614718  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  23614719 attaatctat-tattaaacagacaattattgatgaaattgg 23614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 29799150 - 29799042
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||||||||||||| | ||||||| || ||||||| ||||| ||||||||| | ||| | |||||||||| || |||||||   |||| ||||||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  29799050 taaaattgg 29799042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33241420 - 33241370
Alignment:
Q  1 aattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcata 50  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  33241420 aattatagagaaaacttttcaacaataaaaattatcaagacaatagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 46515604 - 46515716
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||||||| || |||||| ||||    
T  46515604 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatctatttattaaacagtcaa 46515701  T
Q  139 ttatagataaaattg 153  Q
    | || ||||||||||    
T  46515702 tcatggataaaattg 46515716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 47367859 - 47367937
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg 103  Q
    |||||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||| |||| | ||||||||||    
T  47367859 taaaaattatcaaggcaatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtctaattgtttacattg 47367937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 21972427 - 21972538
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || | |||||||||||| | |||| |||||||| || |||||| ||||    
T  21972427 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgcttacattgaaaa-acattaataatctatttattaaacagtcaa 21972524  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  21972525 ttatggataaaatt 21972538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 52111109 - 52111063
Alignment:
Q  16 tttcaacaataaaaattatcaagacaatagtcataaacaaattaaat 62  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||    
T  52111109 tttcaacaataaaaattatcatgaaaataatcataaacaaattaaat 52111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 28403123 - 28403210
Alignment:
Q  64 gacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaa 150  Q
    ||||||||||||  ||||||||| ||||| |||||||||| |||| | |||||| |||||| || |||||  ||||||||| ||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctatttaataaacggtcaattataaataaaa 28403210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 29363641 - 29363504
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  29363641 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 29363542  T
Q  114 attaatctatctagtaaacactcaattatagataaaatt 152  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  29363541 attaatctat-tattaaacaaacaattattgatgaaatt 29363504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 29486438 - 29486577
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaat 108  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||   |||||||| |||||    
T  29486438 aaaacttttcaagagtaaaaattattaagacaatagtcataaacaaattaattggacaat-agtttcttgcaaataacctattttcttacattgaaaaat 29486536  T
Q  109 atattattaatctatctagtaaacactcaattatagataaa 149  Q
    |||||| |||||||| ||||||||  |||||||| ||||||    
T  29486537 atattaataatctatttagtaaacggtcaattatggataaa 29486577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 1780740 - 1780628
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| | ||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  1780640 ataaaattggttt 1780628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 34729825 - 34729902
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 92  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||||||| |||||||||| |||||    
T  34729825 ttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgtacaatgagtttcttgcaaataacctatt 34729902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 24428798 - 24428907
Alignment:
Q  25 taaaaattatcaagacaatagtcataaaca---aattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatc 120  Q
    |||||||||| |||||||||||||||||||   ||||||||||||| ||||||| ||| |||||| ||||| ||| |||||| |||| | ||||||||||    
T  24428798 taaaaattattaagacaatagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatc 24428897  T
Q  121 tatctagtaa 130  Q
    ||| ||||||    
T  24428898 tatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 904124 - 904013
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||| ||| || |||||  ||||    
T  904124 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatttatttattaaacggtcaa 904027  T
Q  139 ttatagataaaatt 152  Q
    |||| |||||||||    
T  904026 ttatggataaaatt 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 22956504 - 22956432
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 22956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 22956547 - 22956511
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22956547 ttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 23831845 - 23831881
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23831845 ttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 23831888 - 23831960
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 23831960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 8560013 - 8559901
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | |||||||| |||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  8560013 acaatagtgagaaacaaatgaaatagataataagttctttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 8559916  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  8559915 ttatggataaaattg 8559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 7004 - 6920
Alignment:
Q  18 tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  7004 tcaacaataaaaattatcaagacaatagtcataaacagattaaatgaacaataagtttattgcaaataacatattagtttacatt 6920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 17653083 - 17652944
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  17653083 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaagacatt 17652984  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  17652983 attaatctat-tattaaacaaacaattattgatgaaattgg 17652944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 21295982 - 21296069
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21295982 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21296069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 46823854 - 46823941
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  46823854 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 46823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 40763813 - 40763925
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  40763913 ataaaattggttt 40763925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 16152280 - 16152419
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 113  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  16152280 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 16152379  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  16152380 attaatctat-tattaaacagacaattattgatgaaattgg 16152419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 29648391 - 29648530
Alignment:
Q  17 ttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattat 115  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||| || | || ||||| |||| |||| | |||||    
T  29648391 ttcaacgatataaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattat 29648490  T
Q  116 taatctatctagtaaacactca--attatagataaaattg 153  Q
    |||| ||| ||||||||| |||  ||||| ||||||||||    
T  29648491 taatttatttagtaaacaatcaatattatggataaaattg 29648530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 3458173 - 3458062
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaa-aatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||||||||||||| | ||||||| ||||||||||  |||| ||||||| || | || | ||||||||| ||||||||||||  |||||||||||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  146 taaaattggttt 157  Q
    ||||||||||||    
T  3458073 taaaattggttt 3458062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 20843284 - 20843176
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| |||||||   || ||||| ||    
T  20843284 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatgga 20843185  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  20843184 taaaattgg 20843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 11027979 - 11027911
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa 83  Q
    ||||||| || ||||||| ||||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  11027979 ttttcaaaaacaaaaattctcaagacaatagtcatggacaaattaaatgtacaatgagtttcttgcaaa 11027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 35106593 - 35106481
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| |||| | || ||  ||||||||||||| | |||| |||||||| || |||||| ||||    
T  35106593 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaattacctgtttctttacattgaaaa-acattaataatctatttattaaacagtcaa 35106496  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  35106495 ttatggataaaattg 35106481  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38171425 - 38171466
Alignment:
Q  10 aaaaattttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  38171425 aaaacttttcaacaaaaaaaattatcaagacaatagtcataa 38171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 11906698 - 11906662
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11906698 ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 52403338 - 52403266
Alignment:
Q  83 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 52403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 52403381 - 52403345
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataa 51  Q
    |||||||||||||||| ||||||||||||||||||||    
T  52403381 ttttcaacaataaaaactatcaagacaatagtcataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 19795621 - 19795732
Alignment:
Q  39 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 138  Q
    |||||||| | |||||||| |||| || ||| ||||| || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  19795621 acaatagtgagaaacaaatgaaatagataataagttt-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 19795717  T
Q  139 ttatagataaaattg 153  Q
    |||| ||||||||||    
T  19795718 ttatggataaaattg 19795732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 42799275 - 42799168
Alignment:
Q  25 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctat 123  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||| | |||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  124 ctagtaaa 131  Q
     |||||||    
T  42799175 ttagtaaa 42799168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 16546354 - 16546466
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 144  Q
    ||||||||||||||||||||| ||||||| || ||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  16546454 ataaaattggttt 16546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 39070292 - 39070180
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagttt-acattg-aaaatatattattaatctatctagtaaacactcaattatag 144  Q
    |||||| |||||||||||||| ||||||| |||||||||| ||||| |||| |||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  39070292 cataaataaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 39070193  T
Q  145 ataaaattggttt 157  Q
    |||||||||||||    
T  39070192 ataaaattggttt 39070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 4435242 - 4435380
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||| |||||||||||||||| |||||||||||||| | || || |||||||||||||||| ||| |||||| |||||  |||||| ||||||| | |||    
T  4435242 tttttaacaataaaaattatctagacaatagtcatagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacatt 4435341  T
Q  114 attaatctatctagtaaacactcaattatagataaaattg 153  Q
    |||||||||| || ||||||  ||||||| ||| ||||||    
T  4435342 attaatctat-tattaaacagacaattatggatgaaattg 4435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 45656043 - 45655935
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 145  Q
    ||||||||| | ||||||||| ||| ||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  ||||||||  |    
T  45656043 cataaacaattgaaatggacattgaatttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaa 45655944  T
Q  146 taaaattgg 154  Q
    |||||||||    
T  45655943 taaaattgg 45655935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 38881702 - 38881761
Alignment:
Q  16 tttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagttt 75  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||| |||||||||||    
T  38881702 tttcaacaataaaaattatcaagataatagtcatagataaattaaatgtacaatgagttt 38881761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 26180642 - 26180690
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatg 63  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  26180642 tttttaacaattaaaactatcaagacaatagtcataaacatattaaatg 26180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 37614591 - 37614680
Alignment:
Q  47 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtt---tacatt-gaaaatatattattaatctatctagtaaac 132  Q
    |||||||||||||||| |||| ||| ||| |||||||||| ||||| |||   |||||| ||||| | ||||||||||||| ||||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaac 37614680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 292364 - 292225
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||| |||||  |||| | ||||||| | | |    
T  292364 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacact 292265  T
Q  114 attaatctatctagtaaacactcaattatagataaaattgg 154  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  292264 attaatctat-tattaaacaggcaattattgatgaaattgg 292225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 6672 - 6773
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 113  Q
    |||||||||||||||||||   |||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||  |||||| ||||||| | |||    
T  6672 ttttcaacaataaaaatta---agacaatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacatt 6768  T
Q  114 attaa 118  Q
    |||||    
T  6769 attaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 778 - 812
Alignment:
Q  15 ttttcaacaataaaaattatcaagacaatagtcat 49  Q
    |||||||||||||||||||||||||||||||||||    
T  778 ttttcaacaataaaaattatcaagacaatagtcat 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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