View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_20 (Length: 610)
Name: NF0928_high_20
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 259 - 601
Target Start/End: Original strand, 44008743 - 44009079
Alignment:
| Q |
259 |
tccacttgaccgccctaacgatcaagttttatcttagtagacacatagctagccttttagaaaataccaaaaacaagtcaaatttttatacagacttctt |
358 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44008743 |
tccacttgactgccctaacgatcaagttttatcttagtagacacatagctagccttttagaaaataccaaaaacaagtcaaatttttata--gacttctt |
44008840 |
T |
|
| Q |
359 |
taagtgaaaattaagagtgacacacaagaaaactaggtgtgttctatttaaacattgtctgtaaagtagtatcagaactcttccatacaccacttttggt |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44008841 |
taagtgaaaattaagagtgacacacaagaaaactaggtgtgttctatttaaacattgtctgtaaagtagtatcagaactctttcatacaccacttttggt |
44008940 |
T |
|
| Q |
459 |
gtataaactataattaaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatga |
558 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44008941 |
gtataaactataa----agagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatga |
44009036 |
T |
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| Q |
559 |
gatatcacatcttttgaagatccaacaaattttccacctatga |
601 |
Q |
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| T |
44009037 |
gatatcacatcttttgaagatccaacaaattttccacctatga |
44009079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 44008467 - 44008699
Alignment:
| Q |
30 |
ccaaatagatatgaatgtggtatatagattcatatttaaagatcttggcattagttcaatatacaagatcttgtttttcataaaatnnnnnnntaataat |
129 |
Q |
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| T |
44008467 |
ccaaatagatatgaatgtggtatatagattcatatttaaagatcttggcattagttcaatatacaagatcttgtttttcataaaataaaataaaaaaaaa |
44008566 |
T |
|
| Q |
130 |
aat-ttccatcaaccattccaatatacatttttgtatgggatgagccatggcgcaatggccaaattgattccttgtgaccggtggttagtcacgagttca |
228 |
Q |
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| T |
44008567 |
aaaattccatcaac-attccaatatacatttttgtatgggatgagccatggcgcaatggccaaattgattccttgtgacc---ggttagtcacgagttca |
44008662 |
T |
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| Q |
229 |
aattgatcccttatccactttcctcacaaatccactt |
265 |
Q |
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| T |
44008663 |
aattgatcccttatccactttcctcacaaatccactt |
44008699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 473 - 601
Target Start/End: Original strand, 44005025 - 44005153
Alignment:
| Q |
473 |
taaagagttctgaatggaaatatgactaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttt |
572 |
Q |
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|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44005025 |
taaagagttctgaatgaaactataactaaaaccaaatggcctttgcatccataagcatttgtttgagtgatccatcaacatgatgagatatcacatcttt |
44005124 |
T |
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| Q |
573 |
tgaagatccaacaaattttccacctatga |
601 |
Q |
| |
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||| ||||| ||||||||||||||||||| |
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| T |
44005125 |
tgaggatcctacaaattttccacctatga |
44005153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 39846938 - 39846834
Alignment:
| Q |
497 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacc |
596 |
Q |
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|||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |
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| T |
39846938 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
39846839 |
T |
|
| Q |
597 |
tatga |
601 |
Q |
| |
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|||| |
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| T |
39846838 |
aatga |
39846834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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