View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_208 (Length: 251)
Name: NF0928_high_208
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_208 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 33716746 - 33716524
Alignment:
| Q |
16 |
atgattcatcgtgatgatcccgtgaaagcttttctacattaggcnnnnnnncctttggtgtggtagctatgagtttgaaaaaatgttgcaaaacaaaact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33716746 |
atgattcatcgtgatgatcccgtgaaagcttttctacattaggcttcttttcccttggtgtggtagctatgagtttgaaaaaatgttgcaaaacaaaact |
33716647 |
T |
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| Q |
116 |
actgatcacagttcttggttatttgtttagctcttgaactggttggtgtttcctattgtgtaaatgcatgtattggtttgcaatgacttcttttgtatta |
215 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33716646 |
gctgatgacagttcttggt-------------cttgaactggttggtgtttcctattgtgtaaatgtatgtattggtttgcaatgacttcttttgtatta |
33716560 |
T |
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| Q |
216 |
tgggtcactcaacctcatcaagagtgtgtttgatac |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33716559 |
tgggtcactcaacctcatcaagagtgtgtttgatac |
33716524 |
T |
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