View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_209 (Length: 251)
Name: NF0928_high_209
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_209 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 36230537 - 36230778
Alignment:
| Q |
12 |
agagaaagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaattactactctgctggattatgagaaaattgtaattacagaaat |
111 |
Q |
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| T |
36230537 |
agagaaagaagactcacgtgagattcagaatgggggttgatgactggtaagtttgaattactactccgctggattatgagaaaattgtaattacagaaat |
36230636 |
T |
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| Q |
112 |
ttatatacagaagcagaaggccaattaattgagagtaaagaaattcagattttttcaacttcttaaattcacttgaataatagtttaatactacta--ct |
209 |
Q |
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| T |
36230637 |
ttatatacagaagcagaaggccaattaattgagagtaaagaaattcagattttttcaacttcttaaattcacttgaataatagtttaatactactactct |
36230736 |
T |
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| Q |
210 |
ctataagtctaggacatagcaaggttggaataattgtgtcat |
251 |
Q |
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| T |
36230737 |
ctataagtttaggacgtagcaaggttggaataattgtgtcat |
36230778 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 129942 - 130010
Alignment:
| Q |
12 |
agagaaagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaattactactctgc |
80 |
Q |
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| T |
129942 |
agagaaagaagactcacgtgagattcaaaatgggggttgatggttagtaagtgtgaattgctactctgc |
130010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 11240833 - 11240901
Alignment:
| Q |
12 |
agagaaagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaattactactctgc |
80 |
Q |
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| T |
11240833 |
agagaaagaagactcacgtgagattcaaaatgggggttgatggttagtaagtgtgaattgctactctgc |
11240901 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 11759142 - 11759084
Alignment:
| Q |
12 |
agagaaagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaatt |
70 |
Q |
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| T |
11759142 |
agagaaagaagactcacgtgagattcaaaatgggggtcgatggttattaagtttgaatt |
11759084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 15746485 - 15746538
Alignment:
| Q |
17 |
aagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaatt |
70 |
Q |
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| T |
15746485 |
aagaagactcacgtgagattcaaaatggaggttgatggttaataagtttgaatt |
15746538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 1569826 - 1569773
Alignment:
| Q |
17 |
aagaagactcacgtgagattcagaatgggggttgatgactgataagtttgaatt |
70 |
Q |
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| T |
1569826 |
aagaagactcacgtgagattcaaaatggaggttgatggttaataagtttgaatt |
1569773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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