View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_219 (Length: 250)
Name: NF0928_high_219
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_219 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34618593 - 34618830
Alignment:
| Q |
1 |
caaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaattaacaaccnnnnnnnnnctcacgccacctttgtgtaatttgtac |
100 |
Q |
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| T |
34618593 |
caaaatcagcaaattag-taagtacaataagaaaatgaattagtataattagaaattaacaaaaaaaaaaaaactcacaccaactttgtgcaatttgtac |
34618691 |
T |
|
| Q |
101 |
aaaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgtagaatccatatgctgaacaatcgaaacaaaaaataaaacataggaat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
34618692 |
aaaatgagaaccaatcaaaatttttgtttcacaaatctatttgtagactgtgtagaatccatatgttgaacaatcgaaacaacaaataaaacataggaat |
34618791 |
T |
|
| Q |
201 |
ctcaatatcaagtcaaattgttggctttttgacctctctg |
240 |
Q |
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| T |
34618792 |
ctcaatatcaagtcaaattgttgg-tttttgacctctctg |
34618830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47667519 - 47667750
Alignment:
| Q |
1 |
caaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaattaacaaccnnnnnnnnnctcacgccacctttgtgtaatttgtac |
100 |
Q |
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|||||||||| | ||||||||||| |||||| | |||||||||||||||||||||| || | ||||||||| ||||||||||| ||||| |
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| T |
47667519 |
caaaatcagcgacttaggtaagtaaaataggtatatgaattagtataattagaaataaaata-----aaaaaactcacgccagctttgtgtaatgtgtac |
47667613 |
T |
|
| Q |
101 |
aaaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgtagaatccatatgctgaacaatcgaaacaaaaaataaaacataggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||||| ||| |
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| T |
47667614 |
aaaatgagaaccaatcaaaattgttgtttcacaaatctatctgtagactatgtagaatccatatg-tgaacaactgaaacaacaaataaaacatacaaat |
47667712 |
T |
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| Q |
201 |
ctcaatatcaagtcaaattgttggctttttgacctctct |
239 |
Q |
| |
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| T |
47667713 |
ttcaatatcaagttaaactgttggc-ttttgacctctct |
47667750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 34709769 - 34709537
Alignment:
| Q |
2 |
aaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaattaacaaccnnnnnnnnnctcacgccacctttgtgtaatttgtaca |
101 |
Q |
| |
|
||||||| ||| || |||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||||||||||||| |
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| T |
34709769 |
aaaatcaacaacttgggtaagtaaaataggaatatgaattagtataattagaaattaaaaa----aaaaaaactcatgccgagtttgtgtaatttgtaca |
34709674 |
T |
|
| Q |
102 |
aaatgagaaccaatcaaaattgttgtttcacaaatctatttgtagactgcgtagaatccatatgctgaacaatcgaaacaaaaaataaaacataggaatc |
201 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| ||| | | ||||||||||| |||||||||| ||||||| |||||||||||| |||| |
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| T |
34709673 |
aagtgagaaccaatcaaaattgttgtttcacaaatctatccgtaaattatatagaatccatacgctgaacaattgaaacaacaaataaaacatacaaatc |
34709574 |
T |
|
| Q |
202 |
tcaatatcaagtcaaattgttggctttttgacctctct |
239 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
34709573 |
tcaatatcaagtcaaactgttggc-ttttgacctctct |
34709537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26764592 - 26764537
Alignment:
| Q |
1 |
caaaatcagcaaattaggtaagtacaataggaaaatgaattagtataattagaaat |
56 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
26764592 |
caaaatcagcaaattaggtgagtaaaataggaaaataaattagtataattagaaat |
26764537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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