View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_22 (Length: 579)
Name: NF0928_high_22
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 31526641 - 31527113
Alignment:
| Q |
11 |
cataggcaagagtgccacctacattaacctgttttgcattatagtaaaatatattatggagtgaggaaaattttgaagatattattcatatgaacttggc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526641 |
cataggcaagagtgccacctacattaacctgtttcgcattatagtaaaatatattatggagtgaggaaaattttgaagatattattcatatgaacttggc |
31526740 |
T |
|
| Q |
111 |
atgataaaaatctaagtttgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526741 |
atgataaaaatctaagtttgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctcc |
31526840 |
T |
|
| Q |
211 |
aaccggtccacaaactgctattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgcca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526841 |
aaccggtccacaaactgctattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgcca |
31526940 |
T |
|
| Q |
311 |
gcttgaatttccacgacattagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526941 |
gcttgaatttccacgacattagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgat |
31527040 |
T |
|
| Q |
411 |
caaaggaaaccttaacttgaatcaaaatcgatagagcttctggaatcattttaacaggatctcccatgctttt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527041 |
caaaggaaaccttaacttgaatcaaaatcgatagagcttctggaatcattttaacaggatctcccatgctttt |
31527113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 92 - 478
Target Start/End: Complemental strand, 15125624 - 15125241
Alignment:
| Q |
92 |
ttattcatatgaacttggcatgataaaaatctaagtttgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaa |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| | |||| ||||||||||||||||||||| ||| || || |||||||| ||||||||||||| || |
|
|
| T |
15125624 |
ttattcatatgaatttggcatgataaaaacctaaatatgttctattagtaacttacagttcctgaaatcttagggatctctccaagtattgcatacaaaa |
15125525 |
T |
|
| Q |
192 |
gagacgattttccagctccaaccggtccacaaactgctattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaag |
291 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||| |||||||||| || |||||| ||||||||||||||| |||| | ||| |||| ||||||| | |
|
|
| T |
15125524 |
gagatgattttccagatccaactggtccacaaactgcaattttctgtctccattttatctctaaattaacatcttttaaggctggagacatagattcatg |
15125425 |
T |
|
| Q |
292 |
atcccaagtgaagttgccagcttgaatttccacgacattagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagc |
391 |
Q |
| |
|
||||||| ||||||| ||| ||||||||| | ||||| |||||| || |||| || |||||||| | |||| ||||| ||| ||||||||||| |
|
|
| T |
15125424 |
atcccaaatgaagtttccatcttgaatttgtaaagcattaactgaacactggtttaagtttttttcac---tctcattattgttaaggtcttcatcaaga |
15125328 |
T |
|
| Q |
392 |
aaaaagttattaagacgatcaaaggaaaccttaacttgaatcaaaatcgatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||| | | |||||||| ||||| || || ||||||| ||||||||| |
|
|
| T |
15125327 |
aaaaagttattaagacgatcgaatgaaaccttagcttgaatcatattggatagagcctctgggatagttctaacaggttctcccatg |
15125241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 140 - 478
Target Start/End: Original strand, 5290771 - 5291106
Alignment:
| Q |
140 |
taacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgctattttctgtc |
239 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5290771 |
taacttacagttccttgaatcttgggaatctctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtc |
5290870 |
T |
|
| Q |
240 |
cccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgccagcttgaatttccacgacattagatgaaca |
339 |
Q |
| |
|
|| ||| ||||||||||| ||||| |||| ||||| |||| ||||||| |||||||| ||||||| ||| ||||||| ||||| |||| ||| |
|
|
| T |
5290871 |
tccatttgatttctaaatttacatcctttaaggttggagacatagattcatgatcccaattgaagtttccatcttgaatctccacagcattgaccgaaag |
5290970 |
T |
|
| Q |
340 |
atgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgatcaaaggaaaccttaacttgaatcaaaatc |
439 |
Q |
| |
|
|||| ||||| | |||||| |||||||||||| |||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
5290971 |
ttgctgtatgtttctttcac---tatcatcattgtttagttcttcatcaagcaaaaaattagtaagacgatcgaacgaaaccttaacttgaatcagaatg |
5291067 |
T |
|
| Q |
440 |
gatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
||||||||||| || |||||| ||||||| ||||||||| |
|
|
| T |
5291068 |
gatagagcttcagggatcattctaacaggttctcccatg |
5291106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 139 - 478
Target Start/End: Complemental strand, 5313538 - 5313202
Alignment:
| Q |
139 |
gtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgctattttctgt |
238 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5313538 |
gtaacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgattttccagctccaacaggtccgcaaactgctattttctgt |
5313439 |
T |
|
| Q |
239 |
ccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgccagcttgaatttccacgacattagatgaac |
338 |
Q |
| |
|
|||| |||||| ||||| || |||||| |||||||| |||| ||||||||| |||||||| |||||||||||||||| ||| |||| |||| ||||| |
|
|
| T |
5313438 |
ccccattttatctctaagttcacatcttttaaagtttgggatacagattcatgatcccaaatgaagttgccagcttggattaccacagcattgactgaac |
5313339 |
T |
|
| Q |
339 |
aatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgatcaaaggaaaccttaacttgaatcaaaat |
438 |
Q |
| |
|
| |||||||| | | || | |||||||||||| || ||||||||||||| ||| | || |||||||||||||||||||||||||||||| || |
|
|
| T |
5313338 |
attgctttatatttctt---ccattatcatcattactcagctcttcatcaagcataaatgtgttgagacgatcaaaggaaaccttaacttgaatcgttat |
5313242 |
T |
|
| Q |
439 |
cgatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
5313241 |
agatagagcctctgggatcataagaacaggatctcccatg |
5313202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 137 - 478
Target Start/End: Complemental strand, 5306327 - 5305989
Alignment:
| Q |
137 |
tagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgctattttct |
236 |
Q |
| |
|
||||||||||||| ||||| ||| || ||||||||||| ||||||||||||| ||| || |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
5306327 |
tagtaacttacagctccttaaatcttaggaatctctccaagtattgcatacaaaagtgatgattttccggctccaactggtccacaaactgctattttct |
5306228 |
T |
|
| Q |
237 |
gtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgccagcttgaatttccacgacattagatga |
336 |
Q |
| |
|
|||||| ||| ||||||| ||| ||||||||||||||||| |||| ||||| | |||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
5306227 |
gtccccatttgatttctatatttacatctgttaaagttggagacaaagatttatgatcccaaatgaagttgccatcttgaatttccatagcattaacctt |
5306128 |
T |
|
| Q |
337 |
acaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgatcaaaggaaaccttaacttgaatcaaa |
436 |
Q |
| |
|
||| |||| || || | |||||| |||||||||||| |||||||||||||||| || |||||| |||||||| || ||||||||||||||||||| | |
|
|
| T |
5306127 |
acattgctctaggtttctttcac---tatcatcattgtttagttcttcatcaagcagaaggttattgagacgatcgaacgaaaccttaacttgaatcaga |
5306031 |
T |
|
| Q |
437 |
atcgatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
|| |||||||| || || ||||| ||||||| ||| ||||| |
|
|
| T |
5306030 |
atggatagagcctcagggatcatcctaacaggttctgccatg |
5305989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 129 - 478
Target Start/End: Original strand, 5283265 - 5283611
Alignment:
| Q |
129 |
tgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgc |
228 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5283265 |
tgttctattagtaacttacagttcctgaaatctttggaatctctcctagtattgaatacaaaagagatgattttccagctccaactggtccacaaactgc |
5283364 |
T |
|
| Q |
229 |
tattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgccagcttgaatttccacgaca |
328 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| |||||||||| ||||| |||||| |||||||| ||||||| ||| |||||||||||| || |
|
|
| T |
5283365 |
aattttctgtccccgcctgatttctatattaacatctcttaaagttggagacactgattcatgatcccaaatgaagtttccatcttgaatttccatagca |
5283464 |
T |
|
| Q |
329 |
ttagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgatcaaaggaaaccttaactt |
428 |
Q |
| |
|
||| |||| | ||||| | | | |||| | ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| || || | |
|
|
| T |
5283465 |
ttaactgaaaattgcttcaagcttctttcgc---catcatcattgtttatctcttcatcaagcaaaaagttattaagacgatcaaacgaaactttcacct |
5283561 |
T |
|
| Q |
429 |
gaatcaaaatcgatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
|||||| ||| || ||||| ||||| |||| ||||| || ||||||||| |
|
|
| T |
5283562 |
gaatcataatggaaagagcctctgggatcaatttaaatggttctcccatg |
5283611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 129 - 459
Target Start/End: Complemental strand, 11832870 - 11832543
Alignment:
| Q |
129 |
tgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgc |
228 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11832870 |
tgttctattagaaacttacagttcctgaaatctttggaatctctcctagtattgcatacaaaagagatgattttccagctccaactggtccacaaactgc |
11832771 |
T |
|
| Q |
229 |
tattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcccaagtgaagttgccagcttgaatttccacgaca |
328 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| |||||||||| |||||||||| | |||| ||| |||||| ||| |||||||||||| | |
|
|
| T |
11832770 |
aattttctgtccccacctgatttctatattaacatctcttaaagttggagacacagatttatgatcacaaatgaagtctccatcttgaatttccatagaa |
11832671 |
T |
|
| Q |
329 |
ttagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaaagttattaagacgatcaaaggaaaccttaactt |
428 |
Q |
| |
|
||| |||||| ||||||| || | |||| | ||||||||||| | ||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
11832670 |
ttaactgaacattgctttaagtttctttcgc---catcatcattgtatatttcttcatcaagcaaaaagttattaagacgatcgaacaaaactttaactt |
11832574 |
T |
|
| Q |
429 |
gaatcaaaatcgatagagcttctggaatcat |
459 |
Q |
| |
|
|||||| ||| || ||||| ||||| ||||| |
|
|
| T |
11832573 |
gaatcataatggaaagagcctctgggatcat |
11832543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 96 - 478
Target Start/End: Original strand, 14950046 - 14950425
Alignment:
| Q |
96 |
tcatatgaacttggcatgataaaaatctaagtttgttgtattagtaacttacagttccttgaatatttggaatctctccgagtattgcatacagaagaga |
195 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||| ||||||| |||||||||||||||||| || | ||||||||||||||||||||||| |||||| |
|
|
| T |
14950046 |
tcatatgaactttgcatgataaagatctaaatttgtactattagttacttacagttccttgaatcttggaaatctctccgagtattgcatacaaaagaga |
14950145 |
T |
|
| Q |
196 |
cgattttccagctccaaccggtccacaaactgctattttctgtccccgttttatttctaaattaacatctgttaaagttggggacacagattcaagatcc |
295 |
Q |
| |
|
|||||||| | ||| || | ||| |||||||| ||||| |||| || ||| || |||||||| |||| |||||||||||| || ||||||||| ||||| |
|
|
| T |
14950146 |
tgattttccggatcccactgctccgcaaactgcaattttgtgtctccatttgatatctaaattcacatttgttaaagttggagatacagattcatgatcc |
14950245 |
T |
|
| Q |
296 |
caagtgaagttgccagcttgaatttccacgacattagatgaacaatgctttatgtgtttttcactattatcatcattgtgaagttcttcatcaagcaaaa |
395 |
Q |
| |
|
||| ||||||| ||| ||||||| || || ||||| |||| |||||| || | ||| || |||||||||||| ||||||||| ||||||||| |
|
|
| T |
14950246 |
caaatgaagttaccatcttgaatgtcgacagcattaaccaaacatggctttaagtttcttt---tactatcatcattgtttagttcttcagcaagcaaaa |
14950342 |
T |
|
| Q |
396 |
agttattaagacgatcaaaggaaaccttaacttgaatcaaaatcgatagagcttctggaatcattttaacaggatctcccatg |
478 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||||||| | | |||||||| || || | |||| ||| ||| ||||||||| |
|
|
| T |
14950343 |
agcttttaagacgatcaaacgaaaccttaacttgaatcatagtggatagagcctcagggaacattataataggctctcccatg |
14950425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 5306465 - 5306414
Alignment:
| Q |
11 |
cataggcaagagtgccacctacattaacctgttttgcattatagtaaaatat |
62 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5306465 |
cataggcaagtgtgccacctacattaacctgttttccattatagtaaaatat |
5306414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 5282931 - 5282982
Alignment:
| Q |
11 |
cataggcaagagtgccacctacattaacctgttttgcattatagtaaaatat |
62 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
5282931 |
cataggcaagagttccacctacattaacctgttctccattatagtaaaatat |
5282982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 14949681 - 14949732
Alignment:
| Q |
11 |
cataggcaagagtgccacctacattaacctgttttgcattatagtaaaatat |
62 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
14949681 |
cataggctagtgtgccacctacattaacctgttttccattatagcaaaatat |
14949732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 11833072 - 11833027
Alignment:
| Q |
95 |
ttcatatgaacttggcatgataaaaatctaagtttgttgtattagt |
140 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
11833072 |
ttcatatgaatttggcatgataaaaatctaaatctgttttattagt |
11833027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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