View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_225 (Length: 242)
Name: NF0928_high_225
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_225 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 27105060 - 27105281
Alignment:
| Q |
20 |
agtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
119 |
Q |
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| T |
27105060 |
agtaaaaatcttaatccctcctttcatagatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
27105159 |
T |
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| Q |
120 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105160 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
27105259 |
T |
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| Q |
220 |
tacttagcatcctggattcctc |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
27105260 |
tacttagcatcctggattcctc |
27105281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 27098061 - 27098283
Alignment:
| Q |
20 |
agtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||| ||||||| |
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| T |
27098061 |
agtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggagatgtaaaaatgctaatttcaattgacgcaaacatgttgcat |
27098160 |
T |
|
| Q |
120 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
219 |
Q |
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| T |
27098161 |
ggtgctggtactaaattcactgcttcgttcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccag |
27098260 |
T |
|
| Q |
220 |
tacttagcatcctggattcctcg |
242 |
Q |
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|||||| |||||| ||||||||| |
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| T |
27098261 |
tacttaccatccttgattcctcg |
27098283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 27045325 - 27045525
Alignment:
| Q |
21 |
gtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcatg |
120 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||| || ||||||| | ||||| |||||||||| |||||||| |
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| T |
27045325 |
gtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcacccttccaaagacgcaaacatgttgcatg |
27045424 |
T |
|
| Q |
121 |
gtgctggtactaaattcactgcttcatgcccaccaaaatcta---catctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
217 |
Q |
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|||||||||| |||||||||| ||||| ||| |||||||||| || | |||||| |||||||||||| |||||||| ||||||| |||||| ||||| |
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| T |
27045425 |
gtgctggtacaaaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcacc |
27045524 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
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| |
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| T |
27045525 |
g |
27045525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 27069430 - 27069530
Alignment:
| Q |
114 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
213 |
Q |
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||||| |||||||||||||||||||| |||||| || |||||||||| || | ||| ||||||| ||||| ||||||||||||| ||| ||||||| |
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| T |
27069430 |
ttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctatattttcat---gaaaacccaaatgcttccactctgtcaaaactgttactg |
27069526 |
T |
|
| Q |
214 |
cacc |
217 |
Q |
| |
|
|||| |
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|
| T |
27069527 |
cacc |
27069530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 27062421 - 27062463
Alignment:
| Q |
175 |
gaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
217 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
27062421 |
gaaaacccaaatgtttccactctgttagaaccgttactgcacc |
27062463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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