View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_226 (Length: 241)
Name: NF0928_high_226
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_226 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41797000 - 41797220
Alignment:
| Q |
1 |
tttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattcatgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagatg |
100 |
Q |
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| T |
41797000 |
tttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattcatgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagagg |
41797099 |
T |
|
| Q |
101 |
aatgaagaataatgaaaagctacgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctcttataattatagagataaattattg |
200 |
Q |
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| T |
41797100 |
aatgaagaataatgaaaagctacgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctcttataattatagagataaattattg |
41797199 |
T |
|
| Q |
201 |
atcgattggtatggtttagaa |
221 |
Q |
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| T |
41797200 |
atcgattggtatggtttagaa |
41797220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 41762982 - 41763104
Alignment:
| Q |
80 |
aaagaaaacaaacccgagatgaatgaagaataatga--aaagctacgttgtaatgttatgagtccacgtttggttgtatcatgtggcaagggtggctctt |
177 |
Q |
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||||||| |||| | ||||||||||||||||||||| |||||||| | | |||||||||| ||||||| |||||||||||||||||||||| | | ||| |
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| T |
41762982 |
aaagaaagcaaatcagagatgaatgaagaataatgatcaaagctacatagcaatgttatgaatccacgtgtggttgtatcatgtggcaagggcgtccctt |
41763081 |
T |
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| Q |
178 |
ataattatagagataaattattgat |
202 |
Q |
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| T |
41763082 |
ataatttt--agataaattattgat |
41763104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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