View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_242 (Length: 219)

Name: NF0928_high_242
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_242
NF0928_high_242
[»] chr3 (7 HSPs)
chr3 (4-91)||(23139820-23139907)
chr3 (9-83)||(23148537-23148611)
chr3 (25-89)||(23038836-23038900)
chr3 (24-83)||(23016856-23016915)
chr3 (39-90)||(23145729-23145780)
chr3 (24-89)||(23035964-23036029)
chr3 (35-83)||(23024077-23024125)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 23139820 - 23139907
Alignment:
Q  4 actaacagtatcttctagttaagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcatctcact 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23139820 actaacagtatcttctagttaagctcacatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcact 23139907  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 23148537 - 23148611
Alignment:
Q  9 cagtatcttctagttaagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttc 83  Q
    |||| ||||||||| |||||||| | ||  ||||||||||| ||||||||||  |||||||||||||||||||||    
T  23148537 cagtttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatcttttc 23148611  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 23038836 - 23038900
Alignment:
Q  25 agctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcatctca 89  Q
    ||||||||||||   |||||||||| |||||||||  |||||||||||||||||||||| |||||    
T  23038836 agctcatatgacttacaaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctca 23038900  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 23016856 - 23016915
Alignment:
Q  24 aagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttc 83  Q
    |||||||| |||||  |||||||||| ||||||||||||| | |||||| ||||||||||    
T  23016856 aagctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttc 23016915  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23145729 - 23145780
Alignment:
Q  39 gcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcatctcac 90  Q
    ||||||||| | ||||||||||  ||||||||||||||||||||| ||||||    
T  23145729 gcaaaggattataaacaaaagggcacaataaaagatcatcttttcttctcac 23145780  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 23035964 - 23036029
Alignment:
Q  24 aagctcatatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcatctca 89  Q
    |||||||||||||| ||| ||||||| ||||| |||  ||||||||||| ||||| |||| |||||    
T  23035964 aagctcatatgacatgcagaggatgataaacagaagaaaacaataaaagttcatcctttcttctca 23036029  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 23024077 - 23024125
Alignment:
Q  35 acaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttc 83  Q
    ||||||||| ||||| ||||| |||| |||||||| |||||||||||||    
T  23024077 acaggcaaatgatgataaacagaaggtaacaataatagatcatcttttc 23024125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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