View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_244 (Length: 219)
Name: NF0928_high_244
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_244 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42444260 - 42444050
Alignment:
| Q |
1 |
gtaacactttttgctggctggcatggttatattatatatgtcatgattcatgtagtgtatatttattcttaagtcggcaacaatgattagtatttgtttt |
100 |
Q |
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| T |
42444260 |
gtaacactttttgctggctagcatggttatattatatatgtcatgattcatgtggtgtatatttattcttaagtcggcaacaatgactagtatttgtttt |
42444161 |
T |
|
| Q |
101 |
taaaaggttgttgttgtcttgttgttcctacctaccatattctgtttagcttagtttgttgaaagattgcttcatggattcgtggatattttcttgagtt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42444160 |
taaaaggttgttgttgtcttgttgttcctacctaccatattctgtttagcttagttttttggaagattgcttcatggaatcgtggatattttcttgagtt |
42444061 |
T |
|
| Q |
201 |
ttaatctctgc |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
42444060 |
ttaatctctgc |
42444050 |
T |
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