View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_246 (Length: 219)
Name: NF0928_high_246
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_246 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34742918 - 34743125
Alignment:
| Q |
1 |
ggaggtctaccatcataagctaattgttgcactaagnnnnnnnn-ctttctaaattccgattagttttgaagtacatttaacttaggcatgattgtagtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34742918 |
ggaggtctaccatcataagctaattgttgcactaagcttttttttctttctaaattccgattagttttgaagtacatttaacttaggcatgattgtagtt |
34743017 |
T |
|
| Q |
100 |
ttggtgctctatttttactattttgtagaagtgattcgccaatttgataatctgacaatttggtccctccatcaacattatatgtacaattcttattcct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34743018 |
ttggtgctctatttttactattttgtagaagtgattcgccaatttgataatctgacaatttggtccctccatcaacattatatgtacaattcttattcct |
34743117 |
T |
|
| Q |
200 |
gtgatatt |
207 |
Q |
| |
|
|||||||| |
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|
| T |
34743118 |
gtgatatt |
34743125 |
T |
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