View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_26 (Length: 557)

Name: NF0928_high_26
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_26
NF0928_high_26
[»] chr3 (20 HSPs)
chr3 (257-490)||(44418544-44418777)
chr3 (10-258)||(54747991-54748238)
chr3 (16-258)||(26848111-26848352)
chr3 (71-259)||(25095992-25096180)
chr3 (16-262)||(35612969-35613216)
chr3 (68-256)||(25313366-25313555)
chr3 (72-258)||(50834007-50834194)
chr3 (72-258)||(50841659-50841846)
chr3 (16-261)||(46320431-46320676)
chr3 (16-204)||(48905585-48905772)
chr3 (72-259)||(23026292-23026480)
chr3 (81-259)||(22515638-22515817)
chr3 (16-204)||(9663857-9664041)
chr3 (22-256)||(49794914-49795149)
chr3 (16-242)||(20922724-20922951)
chr3 (258-311)||(18030081-18030134)
chr3 (10-54)||(25095947-25095991)
chr3 (92-162)||(33280346-33280416)
chr3 (115-160)||(31612861-31612906)
chr3 (293-330)||(45054764-45054801)
[»] chr7 (16 HSPs)
chr7 (10-259)||(24989713-24989961)
chr7 (82-259)||(8417658-8417835)
chr7 (16-204)||(7568130-7568317)
chr7 (10-196)||(45062518-45062703)
chr7 (16-263)||(18674498-18674745)
chr7 (17-254)||(23319928-23320165)
chr7 (16-193)||(41850965-41851142)
chr7 (16-259)||(48390271-48390514)
chr7 (74-258)||(48394171-48394354)
chr7 (10-59)||(8417896-8417945)
chr7 (108-164)||(965166-965222)
chr7 (257-344)||(7907545-7907631)
chr7 (26-59)||(8417853-8417886)
chr7 (294-335)||(42121445-42121486)
chr7 (296-340)||(38073711-38073755)
chr7 (266-338)||(45837909-45837981)
[»] chr4 (16 HSPs)
chr4 (17-259)||(43034082-43034323)
chr4 (10-261)||(50150263-50150512)
chr4 (16-259)||(30537582-30537824)
chr4 (16-259)||(27627752-27627994)
chr4 (16-259)||(3067728-3067968)
chr4 (72-260)||(26877161-26877350)
chr4 (16-259)||(782792-783035)
chr4 (72-259)||(25934340-25934526)
chr4 (10-259)||(36187318-36187567)
chr4 (16-202)||(33313287-33313473)
chr4 (16-59)||(25934545-25934588)
chr4 (266-338)||(50297625-50297697)
chr4 (113-168)||(56551518-56551573)
chr4 (258-336)||(30033474-30033552)
chr4 (263-335)||(22019487-22019559)
chr4 (257-337)||(28675674-28675754)
[»] chr2 (18 HSPs)
chr2 (23-260)||(11964149-11964384)
chr2 (10-259)||(10448718-10448966)
chr2 (10-259)||(41435554-41435802)
chr2 (16-259)||(21345032-21345271)
chr2 (74-259)||(22066384-22066569)
chr2 (16-259)||(39778601-39778846)
chr2 (16-259)||(10728244-10728487)
chr2 (16-258)||(13693481-13693722)
chr2 (16-253)||(42993757-42993994)
chr2 (16-204)||(7105608-7105795)
chr2 (16-259)||(25186939-25187180)
chr2 (16-251)||(10700175-10700410)
chr2 (75-253)||(36191585-36191763)
chr2 (16-259)||(19926738-19926979)
chr2 (16-259)||(28830957-28831199)
chr2 (120-258)||(41462666-41462805)
chr2 (298-339)||(410031-410072)
chr2 (266-330)||(25626574-25626638)
[»] chr8 (13 HSPs)
chr8 (17-258)||(13882086-13882325)
chr8 (16-258)||(8669735-8669975)
chr8 (16-249)||(29226286-29226517)
chr8 (10-261)||(37533764-37534015)
chr8 (16-259)||(32305707-32305950)
chr8 (16-253)||(8106899-8107135)
chr8 (16-251)||(35634742-35634977)
chr8 (69-207)||(42569953-42570092)
chr8 (74-209)||(17855397-17855533)
chr8 (86-183)||(36741715-36741815)
chr8 (18-59)||(45177557-45177598)
chr8 (257-338)||(6530398-6530479)
chr8 (298-338)||(8114292-8114332)
[»] chr1 (23 HSPs)
chr1 (10-259)||(1553716-1553964)
chr1 (25-258)||(27332899-27333131)
chr1 (16-259)||(16130463-16130708)
chr1 (10-244)||(35050250-35050483)
chr1 (10-259)||(30222692-30222940)
chr1 (72-259)||(16129970-16130158)
chr1 (10-261)||(45192518-45192768)
chr1 (16-258)||(5800389-5800629)
chr1 (16-260)||(27654604-27654846)
chr1 (16-259)||(40988019-40988262)
chr1 (78-255)||(9411731-9411909)
chr1 (16-176)||(27846418-27846578)
chr1 (16-207)||(36834287-36834472)
chr1 (72-258)||(34546650-34546834)
chr1 (16-259)||(4813702-4813946)
chr1 (136-259)||(35121170-35121293)
chr1 (80-258)||(13879068-13879235)
chr1 (10-144)||(35428415-35428552)
chr1 (72-258)||(23933324-23933512)
chr1 (72-165)||(11907972-11908063)
chr1 (188-251)||(35428357-35428420)
chr1 (16-105)||(35121301-35121389)
chr1 (258-335)||(41884610-41884687)
[»] chr6 (3 HSPs)
chr6 (16-259)||(1365644-1365888)
chr6 (72-259)||(24338018-24338206)
chr6 (16-251)||(7243367-7243602)
[»] chr5 (9 HSPs)
chr5 (68-258)||(21262900-21263090)
chr5 (14-258)||(40385183-40385430)
chr5 (16-260)||(33314327-33314570)
chr5 (16-256)||(41174611-41174851)
chr5 (16-268)||(3097498-3097754)
chr5 (10-259)||(24868466-24868715)
chr5 (72-193)||(4237918-4238039)
chr5 (10-59)||(21262547-21262596)
chr5 (130-210)||(2934953-2935034)
[»] scaffold0067 (1 HSPs)
scaffold0067 (16-261)||(6700-6947)
[»] scaffold0008 (1 HSPs)
scaffold0008 (106-261)||(258356-258512)
[»] scaffold0057 (1 HSPs)
scaffold0057 (16-192)||(30477-30652)
[»] scaffold0263 (1 HSPs)
scaffold0263 (227-266)||(19315-19354)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 257 - 490
Target Start/End: Original strand, 44418544 - 44418777
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattacccttatgttttatagttgtattt 356  Q
    ||||||||||||| |||||||||||| |||||||  |||| |||||||| | |||| ||| | ||||||||||| |||||||| ||||||||||||||||    
T  44418544 tatattatatttttcaatgcaaagttgtcctttttgagttacttaacatataccctgaggacagaagttaacatcacccttatattttatagttgtattt 44418643  T
Q  357 gaccatttgtaacctttttccttagcagcgttacctaacaaatggagcagttctagcattggaagtcagcctctgacttgtgacttgtaataagcaaaaa 456  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44418644 gactatttgtaacctttttccttagcagcgttacctaacaaatggagcagttctagcattggaagtcagcctctgacttgtgacttgtaataagcaaaaa 44418743  T
Q  457 tttaataattcttgaaaaactcaggttaaaaatg 490  Q
    ||||||||||||||||||||||||||||||||||    
T  44418744 tttaataattcttgaaaaactcaggttaaaaatg 44418777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 54748238 - 54747991
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| |||| ||||||||||| || ||||||||||||||||||||||||        || ||||||||||||||||||| |||||||||||||||| ||    
T  54748238 aagaaaatacgttgaaaatagttatcttcatttaatacacttctacatttaaaaaaa-ttatatgaatacccttaaattaattactctttattccatcaa 54748140  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54748139 tttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 54748040  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||       ||||||||||||||||||||||||||||||||||||||||    
T  54748039 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 54747991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 26848111 - 26848352
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||        ||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  26848111 atacattgaaaatagtcatcttcatttaatacacttctacagttaaaaaaa-ttctatgaacacccttaaattaattactctttattccatcaacttact 26848209  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||        
T  26848210 tacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaatgaccaaaa 26848309  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
       ||||||||||||||| ||||||||||||||||||||||||    
T  26848310 aaattctcacttttgtttataataaaaaggaccggagggagta 26848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 71 - 259
Target Start/End: Original strand, 25095992 - 25096180
Alignment:
Q  71 tatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttca 170  Q
    ||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25095992 tatgaatacccttaaattaattactctttattccatcaatttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttca 25096091  T
Q  171 aacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  25096092 aacatacttgaaatttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 25096180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 35612969 - 35613216
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||  |||||| |    
T  35612969 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaacttatt 35613068  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       
T  35613069 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaa 35613168  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtatatt 262  Q
        ||||||||||||||||||||||||||||||||||||||||||||    
T  35613169 aaaattctcacttttgtttctaataaaaaggaccggagggagtatatt 35613216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 25313555 - 25313366
Alignment:
Q  68 ttctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagct 167  Q
    |||||||||||||| ||||||| ||| |||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25313555 ttctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 25313456  T
Q  168 tcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggag 256  Q
    |||||||||||||||||||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  25313455 tcaaacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggagggag 25313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 50834194 - 50834007
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  50834194 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50834095  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||||||||||| |||||  |||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||    
T  50834094 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 50841659 - 50841846
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  50841659 atgaatacccttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaa 50841758  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||||||||||| |||||  |||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||    
T  50841759 acatacttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgttcctaataaaaaggaccggagggagta 50841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 46320676 - 46320431
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||        ||| || || |||| ||||||| |||||||||||| ||  ||||||||    
T  46320676 atacattgaaaatagtaatattcatttaatacacctctatatttaagaaac-ttccattaacacccctaaattaattactctttatttcaccaacttact 46320578  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |||||  |||||||||||||||||       
T  46320577 tacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggacctaa 46320478  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
        |||||||||||||||||||||||||||||||||||||||||||    
T  46320477 aaaattctcacttttgtttctaataaaaaggaccggagggagtatat 46320431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 48905585 - 48905772
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  48905585 atacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccaccaacttact 48905683  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  48905684 tacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 23026292 - 23026480
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||| ||| ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23026292 atgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaa 23026391  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||| || ||||||  |||||||||||| ||||       ||||||||||||||||||||||||||||||||||| |||||    
T  23026392 acatacttgaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagtat 23026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 22515817 - 22515638
Alignment:
Q  81 cttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttg 180  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  22515817 cttaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttg 22515718  T
Q  181 aaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||||| |||||  |||||||||||||||||        | ||| ||||||||||||||||||||| ||||||||||||    
T  22515717 aaacttggtcaatatttcttataaaaaggaccaaaaagaatttcagttttgtttctaataaaaaggatcggagggagtat 22515638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 9663857 - 9664041
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  9663857 atacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccaccaacttact 9663955  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  9663956 tacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-cttgaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 49794914 - 49795149
Alignment:
Q  22 tgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttacttt 121  Q
    |||||||||| || |||||||||||||| |||||||||        ||| |||||||||| | ||||| |||||||||||||||  ||||||||||||||    
T  49794914 tgaaaatagttatcttcatttaatacacctctacatttaattttttttc-atgaataccccttaattaattactctttattccaccaacttacttacttt 49795012  T
Q  122 taatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaag--gaccnnnnnnn 218  Q
    ||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||   |             
T  49795013 taatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatacttgaaacttgatcaatatttcttataaaaagaaaaaaaaaaaga 49795111  T
Q  219 ttctcacttttgtttctaataaaaaggaccggagggag 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49795112 ttctcacttttgtttctaataaaaaggaccggagggag 49795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 20922724 - 20922951
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||| | || |||||||||||||| |||||||||         || ||||||| || ||||||| ||| | |||||||||  ||||||||    
T  20922724 atacattgaaaatatttatcttcatttaatacacctctacatttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaacttact 20922823  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||| |||||  ||||||||||||| |||       
T  20922824 tacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaagaaccaaa 20922923  T
Q  215 nnnnttctcacttttgtttctaataaaa 242  Q
         | |||||||||||||||||||||    
T  20922924 aaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 18030081 - 18030134
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgccc 311  Q
    ||||||||||||||||||||||||||  ||||| | ||| ||||||||||||||    
T  18030081 atattatattttccaatgcaaagttactctttttaggttccttaacatgtgccc 18030134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 25095947 - 25095991
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttcta 54  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  25095947 aagaaaatacattgaaaatagtcatcttcatttaatacatttcta 25095991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 33280346 - 33280416
Alignment:
Q  92 tactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatt 162  Q
    ||||||| ||||||  |||  |||||||||||||||| |||||| |||| ||||||  |||||||||||||    
T  33280346 tactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 31612861 - 31612906
Alignment:
Q  115 ttacttttaatattatctctcataatcaataagggcacaaatgaaa 160  Q
    |||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  31612861 ttacttttaatattctctctcataatgaataaggacacagatgaaa 31612906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 45054764 - 45054801
Alignment:
Q  293 agttgcttaacatgtgcccttagggctgaagttaacat 330  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  45054764 agttgcttaacatgtgcccttagggcacaagttaacat 45054801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 4e-92; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 24989961 - 24989713
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||| ||    
T  24989961 aagaaaatacatttaaaatagtcatcttcatttaatacacttctacatttaaaaaaa-ttctatgaatacccttaaattaattactctttattccatcaa 24989863  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24989862 cttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttctaataaaaagga 24989763  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||       |||||||||||||||||||||||||||||||||||||||||    
T  24989762 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 24989713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 82 - 259
Target Start/End: Complemental strand, 8417835 - 8417658
Alignment:
Q  82 ttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttga 181  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  182 aacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  8417735 aacttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagtat 8417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 7568130 - 7568317
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  7568130 atacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccaccaacttact 7568228  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7568229 tacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 45062703 - 45062518
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||||        |||||||||||||||||||||| ||||| |||||||||| ||    
T  45062703 aagaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaa-ttctatgaatacccttaaattaattactttttattccatcaa 45062605  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatctt 196  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  45062604 cttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaaacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 18674745 - 18674498
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  18674745 atacattgaatatagtcatcttcatttaatacatttctacatttaaaaaaatttc-atgaatacccctaaattaattactctttattccaccaacttact 18674647  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggac-cnnn 214  Q
    || ||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||         
T  18674646 tattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaattttcttataaaaaggacaaaaa 18674547  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtatatta 263  Q
         ||||||||||||||||||||||||||| | ||| ||||| ||||    
T  18674546 aaaaatctcacttttgtttctaataaaaaggatcagagagagtagatta 18674498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 23319928 - 23320165
Alignment:
Q  17 tacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttactt 116  Q
    ||||||||||||||| || ||| |||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||  |||||||||    
T  23319928 tacattgaaaatagttatcttcgtttaatacacctctacatttaaaaaat-ttccatgaatacccctaaattaattactctttattccaccaacttactt 23320026  T
Q  117 acttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnn 215  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||        
T  23320027 acttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgaccaaca 23320126  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggaggg 254  Q
        ||| | |||||||| |||||||||| |||||||||    
T  23320127 aaaatctaatttttgtttttaataaaaagtaccggaggg 23320165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 41850965 - 41851142
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||| || || |||||||||||||| |||||||||        || ||||||||||| ||||||| |||||||||||||||  |||| |||    
T  41850965 atacattgaaaattgttatcttcatttaatacacctctacatttaaatttttttttatgaatacccctaaattaattactctttattccaccaactcact 41851064  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat 193  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  41851065 tacttttaatattctctctcataataaataagggtacaaatgaaatttagtttcaaacatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 48390271 - 48390514
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| | |||||| ||| ||||||||    
T  48390271 atacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattttttatttcatcaacttact 48390369  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||         
T  48390370 tacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggataaaa 48390469  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
           |||||||||||||||||||||||||||||||| |||||    
T  48390470 aaaaaattcacttttgtttctaataaaaaggaccggaggtagtat 48390514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 48394171 - 48394354
Alignment:
Q  74 gaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaac 173  Q
    |||||||| ||||||| |||||||||||||||  |||||||||||||||||||||  || ||||||| |||||||||||||||||||||||| |||||||    
T  48394171 gaatacccctaaattaattactctttattccaccaacttacttacttttaatatt--ctttcataataaataagggcacaaatgaaatttagtttcaaac 48394268  T
Q  174 atacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||| ||||||| |||||  ||||||||||||||||           |||||||||||||||||||||||||||||||||||||    
T  48394269 atacttaaaacttggtcaatatttcttataaaaaggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagta 48394354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 8417945 - 8417896
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  8417945 aagaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 965166 - 965222
Alignment:
Q  108 aacttacttacttttaatattatctctcataatcaataagggcacaaatgaaattta 164  Q
    ||||||||||||||||||||| | ||||||||| ||||||  |||||| ||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaattta 965222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 7907545 - 7907631
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattacccttatgtttt 344  Q
    |||||| |||||||||||||||| ||| | |||| | ||||||||||||||||| | |||||  |||||||||| |||| ||| ||||    
T  7907545 tatattgtattttccaatgcaaaatta-cttttttaggttgcttaacatgtgccttaagggcacaagttaacatgacccatatttttt 7907631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 8417886 - 8417853
Alignment:
Q  26 aatagtcatattcatttaatacacttctacattt 59  Q
    |||| |||||||||||||||||||||||||||||    
T  8417886 aatattcatattcatttaatacacttctacattt 8417853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 42121445 - 42121486
Alignment:
Q  294 gttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  42121445 gttgcttaacatgtgcccttagggcataagttaacatgaccc 42121486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 38073711 - 38073755
Alignment:
Q  296 tgcttaacatgtgcccttagggctgaagttaacattacccttatg 340  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||||    
T  38073711 tgcttaacatgtgccctaagggcacaagttaacatttcccttatg 38073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 45837909 - 45837981
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||||||   ||||| |  |||||||||||||||||| |||||  |||||| ||| |||||||    
T  45837909 ttttccaatgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccctta 45837981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 43034082 - 43034323
Alignment:
Q  17 tacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttactt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  43034082 tacattgaaaatagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatcaacttactt 43034180  T
Q  117 acttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnn 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         
T  43034181 acttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaa 43034280  T
Q  217 nnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
      ||||||||||||||||||||||||||||||||||| |||||    
T  43034281 aattctcacttttgtttctaataaaaaggaccggaggtagtat 43034323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 50150263 - 50150512
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| |||||||||||||| |||| |||||||||||  |||||||||||         |||| |||||||||||||||| ||||| |||||||||| ||    
T  50150263 aagaaaatacattgaaaataatcatcttcatttaatatgcttctacatttaaaaaac--tctaggaatacccttaaattaattactttttattccatcaa 50150360  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50150361 cttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaagga 50150460  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    ||       ||||| |||||||||||||||||||||||||||||||||||||    
T  50150461 ccaaaaaaattctcccttttgtttctaataaaaaggaccggagggagtatat 50150512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 30537582 - 30537824
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  30537582 atacattgaaaatagtcatcttcatttaatacatttctacatttaaaaatttttc-atgaatacccctaaattaattactctttattccaccaacttact 30537680  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         
T  30537681 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaa 30537780  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        |||||||||||||||||| |||||||| ||||||||||||    
T  30537781 aaaatctcacttttgtttctaacaaaaaggatcggagggagtat 30537824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 27627994 - 27627752
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || ||||||||||| | ||||||||||        ||  |||||||||| ||||||| |||||||||||||||  ||||||||    
T  27627994 atacattgaaaatagttatcttcatttaatatatttctacatttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaacttact 27627895  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| |       
T  27627894 tacttttaatatt--ctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggatcaaa 27627797  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        ||  |||||||||||||||||||||||||||||||||||||    
T  27627796 aaaatttccacttttgtttctaataaaaaggaccggagggagtat 27627752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 3067968 - 3067728
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||        ||| |||||||||  ||||||| ||  ||||||||| |  |||||| |    
T  3067968 atacattgaaaatagtcatcttcatttaatacacttctacatttagaaaaa-ttc-atgaatacctctaaattaattcttctttattctactaacttatt 3067871  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         
T  3067870 tacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaaaaa 3067771  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
       ||||||||||| ||||||||||||||||||||| |||||||    
T  3067770 aaattctcactttt-tttctaataaaaaggaccggatggagtat 3067728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 26877350 - 26877161
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||    
T  26877350 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaa 26877251  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
    |||||||| ||| ||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  26877250 acatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtata 26877161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 783035 - 782792
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||  ||||||||    
T  783035 atacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttact 782937  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||        
T  782936 tacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacaaaa 782837  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
         | |||||||||||||||||||||||||||||||| |||||    
T  782836 aaaaatatcacttttgtttctaataaaaaggaccggaggtagtat 782792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 25934526 - 25934340
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    ||||||||||| |||||| || ||||||||||||  |||||| ||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||    
T  25934526 atgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaa 25934428  T
Q  172 acatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||    
T  25934427 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagagagtat 25934340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 36187567 - 36187318
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| |||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||  ||    
T  36187567 aagaaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaa 36187469  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaagg 208  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||  ||||||||||||||    
T  36187468 cttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaagg 36187369  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||          |||||||||||||||||||||||||||||||| |||||    
T  36187368 accaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagtat 36187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 33313473 - 33313287
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||| ||||||||||| |||||||||||||||| || ||||         |  ||||||| || ||||||| ||  |||||||||||  |||||| |    
T  33313473 atacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattcatgaatatccataaattaattcatctttattccactaacttatt 33313374  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttata 202  Q
    |||||||||| || ||||||||||| ||||||||||||||| |||||||  || ||||||| || ||||||| | ||||||||||||    
T  33313373 tacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaaacttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 25934588 - 25934545
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  25934588 atacattgaaaatagtcatcttcatttaatacacttctatattt 25934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 50297697 - 50297625
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||| |||  |||||   ||||||||||||||||||| |||||  |||||||||| |||||||    
T  50297697 ttttccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccctta 50297625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 56551518 - 56551573
Alignment:
Q  113 acttacttttaatattatctctcataatcaataagggcacaaatgaaatttagctt 168  Q
    |||| |||||| |||| ||||| ||||| | |||||||||||||||||||||||||    
T  56551518 acttgcttttagtattctctctaataataattaagggcacaaatgaaatttagctt 56551573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 30033552 - 30033474
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccct 336  Q
    ||||||| |||||||||||||||||   |||||  |||| |||||||| |||| |||||||  |||||||||| |||||    
T  30033552 atattatgttttccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagttaacatgaccct 30033474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 22019487 - 22019559
Alignment:
Q  263 atattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    ||||||||||||| ||| ||  ||||||   ||| |||||||||||||||||||||  |||||||||| ||||    
T  22019487 atattttccaatgtaaaattgcccttttcgggtttcttaacatgtgcccttagggcacaagttaacatgaccc 22019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 28675754 - 28675674
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctt 337  Q
    |||||||| ||||| |||||||| ||   ||| | | ||||||||||||||||||| |||||  |||||||||| ||||||    
T  28675754 tatattatgttttctaatgcaaaattgctcttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccctt 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 11964384 - 11964149
Alignment:
Q  23 gaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttactttt 122  Q
    |||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11964384 gaaaatagtcatcttcatttaatacacttctacatttaaaaaa--ttctatgaatacccttaaattaattactctttattccatcaacttacttactttt 11964287  T
Q  123 aatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttct 222  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||    
T  11964286 aatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattct 11964187  T
Q  223 cacttttgtttctaataaaaaggaccggagggagtata 260  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11964186 cacttttgtttctaatagaaaggaccggagggagtata 11964149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 10448966 - 10448718
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||        || ||||||||||||||||||| ||||| |||||||||| ||    
T  10448966 aagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaag-ttatatgaatacccttaaattaattactatttattccatcaa 10448868  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  10448867 cttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaagagga 10448768  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||       |||||||||||||||||||||||||||||||||||||||||    
T  10448767 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 10448718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 41435554 - 41435802
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||| ||| ||    
T  41435554 aagaaaatgcattgaaaatagtcatcttcatttaatacacttctacatttaattttttttc-atgaatacccttaaattaattactctttatttcatcaa 41435652  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41435653 cttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttattataaaaagga 41435752  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||       |||||||||||||||||||||||||||||||||| ||||||    
T  41435753 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagcgagtat 41435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 21345032 - 21345271
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| |||||||| |||||||||||||||        |||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  21345032 atacattgaaaatagtcatcttcatttattacacttctacatttaaaacaa-ttctataaatacccttaaattaattactctttattccatcaacttact 21345130  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||  | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  21345131 tacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc-aaa 21345227  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
       ||||||||||||||||||||||||||||||||||| |||||    
T  21345228 aaattctcacttttgtttctaataaaaaggaccggaggaagtat 21345271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 74 - 259
Target Start/End: Original strand, 22066384 - 22066569
Alignment:
Q  74 gaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaac 173  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  174 atacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggatcggagggagtat 22066569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 39778601 - 39778846
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnn-ttctatgaatacccttaaattacttactctttattccataaacttac 114  Q
    |||||||||||||||| || |||||||||||||| |||||||||         ||| |||||||||||||||||| |||||||||||||||  |||||||    
T  39778601 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttac 39778700  T
Q  115 ttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnn 213  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||      
T  39778701 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 39778800  T
Q  214 nnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
         || |||||||||||||||||||||| |||||||||||||||    
T  39778801 aaaaattttcacttttgtttctaataaaaaagaccggagggagtat 39778846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 10728244 - 10728487
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||| ||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  10728244 atacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaattc-atgaatacccctaaattaattactctttattccaccaacttact 10728342  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||       
T  10728343 tacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatacttgaaactttgtcaatatttcttataaaaaggaccaaa 10728442  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        |||||||||||||||||||||||||||||||||||||||||    
T  10728443 aaaattctcacttttgtttctaataaaaaggaccggagggagtat 10728487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 13693481 - 13693722
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||        ||| |||||||||| ||||||| || ||||||||||||  |||||| |    
T  13693481 atacattgaaaatagtcatcttcatttaatacacttctatatttaaaaaatattc-atgaatacccctaaattaattcctctttattccactaacttatt 13693579  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    |||||||||| || ||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||        
T  13693580 tacttttaattttctctctcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaa 13693679  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
       |||||||||||||||||||||||||||||||||| |||||    
T  13693680 aaattctcacttttgtttctaataaaaaggaccggagagagta 13693722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 42993757 - 42993994
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||        | | |||||||||| ||||||| || ||||||||||||  |||||| |    
T  42993757 atacattgaaaatagtcatcttcatttaatacacttctatatttaaataaaatcc-atgaatacccctaaattaattcctctttattccactaacttatt 42993855  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggacc-nnn 214  Q
    |||||||||| || ||||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||        
T  42993856 tacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaaggaccaaaa 42993955  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
        |||||||||||||||||||||||||||||||||||    
T  42993956 aaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 7105795 - 7105608
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||        ||| |||||||||| ||||||| |||||||||||||||  ||||||||    
T  7105795 atacattgaaaatagtcatcttcatttaatacatttctacatttaaatttttttc-atgaatacccctaaattaattactctttattccaccaacttact 7105697  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaa 204  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  7105696 tacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatacttgaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 25187180 - 25186939
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||||||||        ||| ||||||| |||||||||| |||||||| ||||||  ||||||||    
T  25187180 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaa-ttccatgaatatccttaaattaattactcttaattccaccaacttact 25187082  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||| ||||       
T  25187081 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaatgaccaaa 25186982  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        || ||||||||||||||||||||||||||||| ||||||||    
T  25186981 aaaatt-tcacttttgtttctaataaaaaggaccgg-gggagtat 25186939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 10700175 - 10700410
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| |||||||||||||||  |||||| |    
T  10700175 atacattgaaaatagttattttcatttaatacacctctacatttaaaaaaa-ttccatgaatacccctaaattaattactctttattccaccaacttatt 10700273  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||||||||| |||        
T  10700274 tacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaagactaaa 10700373  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
        |||||||||||||||||||||||||||| ||||    
T  10700374 aaaattctcacttttgtttctaataaaaaggatcgga 10700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 36191585 - 36191763
Alignment:
Q  75 aatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaaca 174  Q
    ||||||| ||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36191585 aatacccctaaattaattactctttattccacaa-cttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaaca 36191683  T
Q  175 tacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
    ||||||||||||  |||||  |||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  36191684 tacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 19926738 - 19926979
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||| | || |||||||||||||| ||||| |||        ||| | |||||||| ||||||| |||||||||||||||  ||||||||    
T  19926738 atacattgaaaatatttatcttcatttaatacacctctacttttttttcttcttcaa-gaatacccctaaattaattactctttattccaccaacttact 19926836  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  |||||||||||||||||       
T  19926837 tacttttaatatt--ctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccaaa 19926934  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
         | ||||||||||||||||||||||||||||||||||||||    
T  19926935 aaaaatttcacttttgtttctaataaaaaggaccggagggagtat 19926979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 28831199 - 28830957
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| ||||| |||        |   |||||||||| ||||||| |||||||||||| ||  || |||||    
T  28831199 atacattgaaaatagttatcttcatttaatacacctctacgttttaaaaaaatc--atgaatacccctaaattaattactctttattgcaccaatttact 28831102  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||  |||||||||||||||||       
T  28831101 tacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaaa 28831002  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        |||| |||||| |||||||||||| ||||| |||| |||||    
T  28831001 aaaattcttacttttatttctaataaaatggaccagaggaagtat 28830957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 41462805 - 41462666
Alignment:
Q  120 tttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnn 218  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||           
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  219 ttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggagggagta 41462666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 410031 - 410072
Alignment:
Q  298 cttaacatgtgcccttagggctgaagttaacattacccttat 339  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  410031 cttaacatgtgcccttagggcacaagttaacatgacccttat 410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 25626574 - 25626638
Alignment:
Q  266 ttttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacat 330  Q
    ||||||||| ||||||| | | ||| | ||| |||||||||||||||||||||  ||||||||||    
T  25626574 ttttccaattcaaagttgttcattttaggttccttaacatgtgcccttagggcacaagttaacat 25626638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 13882325 - 13882086
Alignment:
Q  17 tacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttactt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  13882325 tacattgaaaatagtcatcttcatttaatacacttctacatttaaaataa-ttctatgaatacccttaaattaattactctttattccatcaacttactt 13882227  T
Q  117 acttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnn 216  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         
T  13882226 acttt-aatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaa 13882128  T
Q  217 nnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
      ||||||||||| ||||||||||||||||||||||| ||||    
T  13882127 aattctcacttttatttctaataaaaaggaccggaggtagta 13882086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 8669975 - 8669735
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||        || ||||||||||||||||||| |||||||||||||||| ||||||||    
T  8669975 atacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaatt-tatgaatacccttaaattaattactctttattccatcaacttact 8669877  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |        
T  8669876 tacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaagga-caaaa 8669778  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
        |||||||||| ||||||||||||||||||||| ||||||    
T  8669777 aaaatctcacttttatttctaataaaaaggaccggaaggagta 8669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 29226517 - 29226286
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||        |||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  29226517 atacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaa-ttctatcaatacccttaaattaattactctttattccatcaacttact 29226419  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  29226418 tacttttaatattttcattcataatcaataagg-cacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaacaaaa 29226320  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccg 249  Q
       |||||||||||||||||||||||||||||||    
T  29226319 aaattctcacttttgtttctaataaaaaggaccg 29226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 37534015 - 37533764
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||| ||||||||||| ||||||||||||| ||||||||||        || |||||||||  |||||||| |||||||||||||||| ||    
T  37534015 aagaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaattatatgaatacatttaaattaattactctttattccatcaa 37533916  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  37533915 cttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaaacttgatcaatcttctaataaaaagga 37533816  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
     |       ||||||||||||||| |||||||||||| |||||  |||||||    
T  37533815 tcaaaaaaattctcacttttgtttataataaaaaggatcggagaaagtatat 37533764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 32305950 - 32305707
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || || ||||||||||  |||||||||        ||| |||||||||| ||||||| ||| |||||||||||  ||||||||    
T  32305950 atacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttact 32305852  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       
T  32305851 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaaa 32305752  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        || |||||||||||||||||||||||||||||||| |||||    
T  32305751 aaaattttcacttttgtttctaataaaaaggaccggaggtagtat 32305707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 8107135 - 8106899
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||| | ||||||||||||||||||||||||        ||| |||||||||| ||||||| || ||||||||||||  |||||| |    
T  8107135 atacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaattc-atgaatacccctaaattaattcctctttattccactaacttatt 8107037  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    |||||||||| || | ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |        
T  8107036 tacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaaggatcaaaa 8106937  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagg 253  Q
       |||||| ||||||||||||||||||||||||||||    
T  8106936 aaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 35634742 - 35634977
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||||| |||||||        | | ||||||| || ||||||| |||||||||||  ||  ||||||||    
T  35634742 atacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatcc-atgaataaccctaaattaattactctttatcgcaccaacttact 35634840  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||        
T  35634841 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacaaaa 35634940  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
        ||||||||||||||| ||||||||| |||||||    
T  35634941 aaaattctcacttttgtttataataaaaatgaccgga 35634977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 42570092 - 42569953
Alignment:
Q  69 tctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagctt 168  Q
    |||||||||| || ||||||| ||||| |||||| ||| |||||||||| |||||||||| ||||||||||| |||||  |||||||| |||||||||||    
T  42570092 tctatgaatatccctaaattaattactatttatttcatcaacttacttatttttaatattctctctcataataaataaatgcacaaataaaatttagctt 42569993  T
Q  169 caaacatacttgaaacttgatcaat-cttcttataaaaag 207  Q
    |||  |||||| ||||||| |||||  |||||||||||||    
T  42569992 caatgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 17855533 - 17855397
Alignment:
Q  74 gaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaac 173  Q
    |||||||| ||||||| ||||| ||   ||||| |||||| |||||||||||| ||| |||||| || |||||||  ||||||||||||||| ||| |||    
T  17855533 gaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaac 17855434  T
Q  174 atacttgaaacttgatcaat-cttcttataaaaagga 209  Q
    | |||| ||| ||| |||||  |||||||||||||||    
T  17855433 acacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 36741715 - 36741815
Alignment:
Q  86 attacttactctttattccataaacttacttacttttaatattatctc---tcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaa 182  Q
    |||| |||||||| ||||||  ||||||||||||||||||||| ||||   | ||||| ||||||| |||||||||||||||||||| |||| | |||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaacacatttgaa 36741814  T
Q  183 a 183  Q
    |    
T  36741815 a 36741815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45177557 - 45177598
Alignment:
Q  18 acattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  45177557 acattgaaaatagtcatcttcatttaatacacttctacattt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 6530398 - 6530479
Alignment:
Q  257 tatattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||| |||||||||||||||||   |||||   ||||||||||||||| ||||||| |  |||||||||| |||||||    
T  6530398 tatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccctta 6530479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 8114332 - 8114292
Alignment:
Q  298 cttaacatgtgcccttagggctgaagttaacattaccctta 338  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  8114332 cttaacatgtgcccttagggcacaagttaacatgaccctta 8114292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 1553964 - 1553716
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||||        |||||| ||||||||||||||| |||||||||||||||| ||    
T  1553964 aagaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaa-ttctataaatacccttaaattaattactctttattccatcaa 1553866  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaagg 208  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  1553865 cttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaagg 1553766  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||       |||||| ||||||||||||||||||||||||||||||||||    
T  1553765 accacaaaaattctca-ttttgtttctaataaaaaggaccggagggagtat 1553716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 27332899 - 27333131
Alignment:
Q  25 aaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttacttacttttaa 124  Q
    |||||||||| ||||||||||||||||||| ||||        |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaa-ttctataaatacccttaaattaattactctttattccattaacttacttacttttaa 27332997  T
Q  125 tattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctca 224  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||    
T  27332998 tattttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctca 27333097  T
Q  225 cttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||| ||||    
T  27333098 cttttgtttctaataaaaaggaccggaggaagta 27333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 16130463 - 16130708
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnt-tctatgaatacccttaaattacttactctttattccataaacttac 114  Q
    |||||||||||||||| || |||||||||||||| |||||||||          || |||||||||||||||||| ||||| |||||||||  |||||||    
T  16130463 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttac 16130562  T
Q  115 ttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnn 213  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||      
T  16130563 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 16130662  T
Q  214 nnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
         || ||||||||||||||||||||||||||||||||||||||    
T  16130663 attttttttcacttttgtttctaataaaaaggaccggagggagtat 16130708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 35050250 - 35050483
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||           |||| |||||||||||||| |||||||||||| ||| ||    
T  35050250 aagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaa-tatgtatacccttaaattaattactctttatttcatcaa 35050348  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |    
T  35050349 cttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaaacttgatcgatctttttataaaaagaa 35050448  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaag 244  Q
    ||       ||||||||||||||||||||||||||    
T  35050449 ccaaaaaaattctcacttttgtttctaataaaaag 35050483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 30222940 - 30222692
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||||        |  |||||||| |||||||||| |||||||||| ||||| ||    
T  30222940 aagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaagta-tatgaatatccttaaattaattactctttaatccatcaa 30222842  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    ||||||||||||||||||| ||| ||||||||||||||  |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||    
T  30222841 cttacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaatcttcttataaaaatga 30222742  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
     |       |||||| |||||||||||||||||||||||||||| |||||    
T  30222741 tcaaaaaaattctcatttttgtttctaataaaaaggaccggaggtagtat 30222692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 16129970 - 16130158
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| ||||| |||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16129970 atgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 16130069  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||    
T  16130070 acatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagtat 16130158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 45192518 - 45192768
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||||||||||        ||| |||||||||||||||||| |||||||||||||||| ||    
T  45192518 aagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaa-ttccatgaatacccttaaattaattactctttattccatcaa 45192616  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagga 209  Q
    |||||||| |||||||||| | ||||||||| ||||||  |||||||||| |||||| | ||| ||| | ||||||| ||||||||||||||||||||||    
T  45192617 cttacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaaaaatattagaaacttaatcaatcttcttataaaaagga 45192716  T
Q  210 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
     |       ||||||||||||||||||||||||||||||||||| |||||||    
T  45192717 tcaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagtatat 45192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 5800389 - 5800629
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||||||||||| |||         ||| |||||||||| ||||||| || ||||||||||||  |||||| |    
T  5800389 atacattgaaaatagtcatcttcatttaatacacttctatatt-aaaaaaaattc-atgaatacccctaaattaatttctctttattccactaacttatt 5800486  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    |||||||||| || ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||        
T  5800487 tacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaa 5800586  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
       ||| |||||||||||||||||||||||| | |||||||||    
T  5800587 aaattcccacttttgtttctaataaaaaggaactgagggagta 5800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 27654846 - 27654604
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||| ||||        ||| || || |||| ||||||| |||||||||||||||  ||||||||    
T  27654846 atacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaa-ttccattaaaacccctaaattaattactctttattccaccaacttact 27654748  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||  |||||||||||||||||       
T  27654747 tacttttaatatt--ctctcataataaataagggcacaaatgaaatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaaggaccaaa 27654650  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
        ||||||||||||||||||||||||||||||||||||||||||    
T  27654649 aaaattctcacttttgtttctaataaaaaggaccggagggagtata 27654604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 40988019 - 40988262
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||||||||        ||| |||||||||| ||||||| ||||||||||||||   ||||||||    
T  40988019 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttact 40988118  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggacc-nn 213  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  |||||||||||||||||       
T  40988119 tacttttaatatt--ctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccaaa 40988216  T
Q  214 nnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
            ||||||||||||||||||||||||||||||||||||||    
T  40988217 aaaaaaattcacttttgtttctaataaaaaggaccggagggagtat 40988262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 9411909 - 9411731
Alignment:
Q  78 acccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatac 177  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  178 ttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggaggga 255  Q
    |||||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||| ||||||||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggga 9411731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 27846578 - 27846418
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||| ||||||||||| || ||||||||||||||||||||||||        ||| ||||||| |||||||||| ||||| | |||||||  ||||||||    
T  27846578 atactttgaaaatagttatcttcatttaatacacttctacatttaaaaacaattccatgaatatccttaaattaattactatctattccaccaacttact 27846479  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacata 176  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  27846478 tacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacata 27846418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 36834472 - 36834287
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||| ||||||||||| || |||||||||||||||||||||        ||| |||||||||  ||||||| |||||||||||||||  ||||||||    
T  36834472 atacattaaaaatagtcatctttatttaatacacttctacatttaaaaaat-ttc-atgaatacc--taaattaattactctttattccaccaacttact 36834377  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaag 207  Q
    |||||||||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  36834376 tacttttaatatt--ctcttataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaattttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 34546834 - 34546650
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| |||||||||||||||  ||||||||||||||||||||  | ||||||||| |||||||||| |||||||| ||||||||||    
T  34546834 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaa 34546738  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||||||| |||||||||||||  || ||||||||| |||        ||||||||||| ||||||||||||||||| | ||||||||    
T  34546737 acatacttaaaacttgatcaatattttttataaaaaagacaaaaaaaattctcacttttatttctaataaaaaggacggaagggagta 34546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 4813702 - 4813946
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||| |||||||| || |||||||||||||| ||| |||||        ||| ||||||||| |||||||| ||||| || ||||||  ||||||||    
T  4813702 atacattaaaaatagttatcttcatttaatacacctctccatttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttact 4813801  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatc-aatcttcttataaaaaggaccnnn 214  Q
    |||||||||||||   ||||||||| |||||||||||||||||||||||| ||||| || |||| ||| ||| || ||  ||||  ||||| |||||       
T  4813802 tacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaaaattggtcaaagtttctcgtaaaatggaccaaa 4813901  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
         |||||||||||||||| ||||||||||||||| |||||||    
T  4813902 aaaaatctcacttttgtttcttataaaaaggaccggatggagtat 4813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 35121293 - 35121170
Alignment:
Q  136 ataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttct 235  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       ||| ||| |||||||||    
T  35121293 ataataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttct 35121194  T
Q  236 aataaaaaggaccggagggagtat 259  Q
    |||||||| || ||| ||||||||    
T  35121193 aataaaaatgatcggggggagtat 35121170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 13879068 - 13879235
Alignment:
Q  80 ccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatactt 179  Q
    |||||||||| ||||||||| |||||  |||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||           |||    
T  13879068 ccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttag-----------ctt 13879156  T
Q  180 gaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
     ||||||||||||||||||| |||||||||||        | ||||||||||||||||||||||||| |||||||||||    
T  13879157 taaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggatcggagggagta 13879235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 35428552 - 35428415
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattcc----a 105  Q
    ||||| ||||||||||||||||||| ||||||||| || |||||| ||||        || ||||||||||||||||||| ||||||||||||||    |    
T  35428552 aagaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaaaatttt-tatgaatacccttaaattaattactctttattccatcaa 35428454  T
Q  106 taaacttacttacttttaatattatctctcataatcaat 144  Q
    | |||||||||||||||||| || |||||||||||||||    
T  35428453 tcaacttacttacttttaattttctctctcataatcaat 35428415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 23933324 - 23933512
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttactttt-aatattatctctcataatcaataagggcacaaatgaaatttagcttca 170  Q
    |||||||||| ||||||| |||||||| |||| |  ||||| |||| |||| |||||| ||||  ||||| ||||||||||||||||||||||| |||||    
T  23933324 atgaatacccctaaattaattactcttgattctaccaactttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttca 23933423  T
Q  171 aacatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |||| | |||||| ||| |||||  || |||||| | ||||        || ||||||||||||||||||||| ||| | |||||||||    
T  23933424 aacacatttgaaaattggtcaatgtttattataatatggactaacaaaattttcacttttgtttctaataaaatggatcagagggagta 23933512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 11908063 - 11907972
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttag 165  Q
    ||||||||| ||| |||| |||||||| ||||||  |||||| ||| |||||||| |  |||||||||| ||||| | ||||||||||||||||    
T  11908063 atgaatacctttacattaattactcttgattccaccaacttatttatttttaatact--ctctcataataaataaagacacaaatgaaatttag 11907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 35428420 - 35428357
Alignment:
Q  188 atcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
    ||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||    
T  35428420 atcaatcttcttataaaaaggataaaaaaaattctcacttttgtttttaataaaaaggaccgga 35428357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 35121389 - 35121301
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattcca 105  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||         |  |||||||||||||||||| || ||||||||||||    
T  35121389 atacattggaaatagtcatcttcatttaatacacttc-acatttaaaaaaaaattcatgaatacccttaaattaattcctctttattcca 35121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 41884687 - 41884610
Alignment:
Q  258 atattatattttccaatgcaaagttatccttttaaagttgcttaacatgtgcccttagggctgaagttaacattaccc 335  Q
    ||||| ||||||||||||||||||| |  || | | ||| ||||||||||||| ||| |||  |||||||||||||||    
T  41884687 atattttattttccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaacattaccc 41884610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 1365888 - 1365644
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||  |||||||||        ||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  1365888 atacattgaaaatagttatcttcatttaatacatctctacatttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttact 1365789  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||       
T  1365788 tacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaac 1365689  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
        |||||||||||||||||||||||||||||||||||||||||    
T  1365688 aaaattctcacttttgtttctaataaaaaggaccggagggagtat 1365644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 24338018 - 24338206
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    ||||||| || ||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  24338018 atgaataaccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 24338117  T
Q  172 acatacttgaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    |||||||||||||||| |||||  |||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||    
T  24338118 acatacttgaaacttggtcaatatttcttataaaaaagaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtat 24338206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 7243367 - 7243602
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || |||||||||||||| |||||||||        | | |||||||||| ||||||| ||| |||||||||||  ||||||||    
T  7243367 atacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatcc-atgaatacccctaaattaattattctttattccaccaacttact 7243465  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnnn 214  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||| ||||       
T  7243466 tacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaaa 7243565  T
Q  215 nnnnttctcacttttgtttctaataaaaaggaccgga 251  Q
        ||||||||||||||| |||||||||||||||||    
T  7243566 aaagttctcacttttgtttataataaaaaggaccgga 7243602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 21262900 - 21263090
Alignment:
Q  68 ttctatgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagct 167  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||    
T  21262900 ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagct 21262999  T
Q  168 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||    
T  21263000 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggagggagta 21263090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 40385183 - 40385430
Alignment:
Q  14 atatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaactta 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||         || |||||||||| ||||||| || ||||||||||||  ||||||    
T  40385183 atatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaataatccatgaatacccctaaattaattcctctttattccactaactta 40385282  T
Q  114 cttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaa---tcttcttataaaaaggac 210  Q
     ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||    
T  40385283 tttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggac 40385382  T
Q  211 cnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 258  Q
    |       ||||||||||||||||||||||||||||||||||| ||||    
T  40385383 caaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 40385430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 33314570 - 33314327
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| ||        ||| |||||||  | ||||||| |||||||||||||||  ||||| ||    
T  33314570 atacattgaaaatggtcatcttcatttaatacatttctacacttaaaaaaatttc-atgaatattcctaaattaattactctttattccaccaacttgct 33314472  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  33314471 tacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaa 33314372  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggagtata 260  Q
        |||||||||||||| ||||||||||||| ||||||||||||    
T  33314371 ataatctcacttttgtttataataaaaaggactggagggagtata 33314327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 41174611 - 41174851
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||         |  |||||||||| | ||||| || ||||||||| ||  |||||| |    
T  41174611 atacattgaaaatagtcatcttcatttaatatacttctatattttaaaaaaaattcatgaatacccctcaattaattcctctttatttcactaacttatt 41174710  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggaccnnnn 215  Q
    |||||||||  || ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||        
T  41174711 tacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaaggaccaaaa 41174810  T
Q  216 nnnttctcacttttgtttctaataaaaaggaccggagggag 256  Q
       |||||||||||||||||| |||||||||||||||||||    
T  41174811 aaattctcacttttgtttctattaaaaaggaccggagggag 41174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 3097498 - 3097754
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnt---tctatgaatacccttaaattacttactctttattccataaactt 112  Q
    |||||||||||||||| || ||||||||||||||||||||||||            || ||| |||||| |||||||  | ||||||||||||  |||||    
T  3097498 atacattgaaaatagtaatcttcatttaatacacttctacatttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattccactaactt 3097597  T
Q  113 acttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaaggac-c 211  Q
    | ||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||      
T  3097598 atttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaaggacaa 3097697  T
Q  212 nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatattatattt 268  Q
            |||||||||||||||||||||||||||||||||||| || |||| ||||    
T  3097698 aaaaaaaatctcacttttgtttctaataaaaaggaccggagggattacattaaattt 3097754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 24868715 - 24868466
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaa 109  Q
    ||||| |||||||||||||||| || |||||||||||||| |||| | ||        ||| || || |||| ||||||| |||||||||||||||  ||    
T  24868715 aagaaaatacattgaaaatagtaatcttcatttaatacacctctataattaagaaaa-ttccattaacacccctaaattaattactctttattccaccaa 24868617  T
Q  110 cttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaagg 208  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||  |||||||||||| |    
T  24868616 cttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaag 24868517  T
Q  209 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtat 259  Q
    ||        ||||||||||||||||||||||||||||  |||||||||||    
T  24868516 acaaaaaaaattctcacttttgtttctaataaaaaggatgggagggagtat 24868466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 4238039 - 4237918
Alignment:
Q  72 atgaatacccttaaattacttactctttattccataaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaa 171  Q
    |||||||||| ||||||| |||||||| ||||||  || ||||||  ||||| |||| | ||||||||| ||||| ||||||||||||||||| ||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaa 4237940  T
Q  172 acatacttgaaacttgatcaat 193  Q
    |||| | ||||| || ||||||    
T  4237939 acatccatgaaaatttatcaat 4237918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 21262547 - 21262596
Alignment:
Q  10 aagaatatacattgaaaatagtcatattcatttaatacacttctacattt 59  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  21262547 aagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 21262596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 2934953 - 2935034
Alignment:
Q  130 tctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatc-ttcttataaaaaggac 210  Q
    ||||||||||| |||||||| | |||||||||||| ||||||| | |||| ||| ||| | |||| ||||||||||||||||    
T  2934953 tctctcataataaataagggtataaatgaaatttaacttcaaatacacttaaaaattggtaaatctttcttataaaaaggac 2935034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 6947 - 6700
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnntt-ctatgaatacccttaaattacttactctttattccataaacttac 114  Q
    |||||||||||||||| || |||||||||||||  |||||||||        || ||||||||| |||||||||| ||||||||||||| |  |||||||    
T  6947 atacattgaaaatagttatcttcatttaatacatctctacatttaatttttttttctatgaatatccttaaattaattactctttattctaccaacttac 6848  T
Q  115 ttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaaaaggaccnn 213  Q
    |||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||      
T  6847 ttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgaccaa 6748  T
Q  214 nnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
         || | |||||||||||||||||||||||||||| |||||||||    
T  6747 attttttttaacttttgtttctaataaaaaggaccggatggagtatat 6700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 106 - 261
Target Start/End: Original strand, 258356 - 258512
Alignment:
Q  106 taaacttacttacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaat-cttcttataaa 204  Q
    |||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||    
T  258356 taaacttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaa 258455  T
Q  205 aaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtatat 261  Q
    |||||||       ||||||||||||||||||||||||||||||||| |||||||||    
T  258456 aaggacctaaaaaattctcacttttgtttctaataaaaaggaccggatggagtatat 258512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 30652 - 30477
Alignment:
Q  16 atacattgaaaatagtcatattcatttaatacacttctacatttnnnnnnnnttctatgaatacccttaaattacttactctttattccataaacttact 115  Q
    |||||||||||||||| || || ||||||||||| ||| |||||        ||| || ||||||| ||||||| |||||||| |||||   ||||||||    
T  30652 atacattgaaaatagttattttaatttaatacacctctgcatttaaatttt-ttccataaatacccctaaattaattactcttgattccgccaacttact 30554  T
Q  116 tacttttaatattatctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaa 192  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||| |||||||| ||| ||||    
T  30553 tacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaacaaacttgaaaattggtcaa 30477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 19354 - 19315
Alignment:
Q  227 tttgtttctaataaaaaggaccggagggagtatattatat 266  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  19354 tttgtttcttataaaaaggaccggaggaagtatattatat 19315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 970 times since January 2019
Visitors: 6707