View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_28 (Length: 555)
Name: NF0928_high_28
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 34 - 555
Target Start/End: Complemental strand, 48671587 - 48671066
Alignment:
| Q |
34 |
ggctccaaagattccctcctatcctagtttataccactttataaaagaaaaactaaaccacacaaaatcaaacattaatctgatccaaattcacttcctt |
133 |
Q |
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| T |
48671587 |
ggctccaaggattccctcctatcctagtttataccactttataaaagaaaaactaaaccacacaaaatcaaacattaatctgatccaaattcacttcctt |
48671488 |
T |
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| Q |
134 |
cacttttcataattcaaacaattcttcaaccaaccatgtcttcagaagacacagaaatcaaaccagaaattcatgtcctattggttgcgttttcagctca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671487 |
cacttttcataattcaaacaattcttcaaccaaccatgtcttcagaagacacagaaatcaaaccagaaattcatgtcctattggttgcgttttcagctca |
48671388 |
T |
|
| Q |
234 |
aggtcacataaaccctttacttagactaggcaaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671387 |
aggtcacataaaccctttacttagactaggcaaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttc |
48671288 |
T |
|
| Q |
334 |
aaatcaaccaccaccgacacggacaccgtcccaacttcttactccaccaatggaatcaacgtcctgtttttctccgacggcttcgacatatctcaaggcc |
433 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48671287 |
aaatcaaccaccaccgacacagacaccgtcccaacctcttactccaccaatggaatcaacgtcctgtttttctccgacggcttcgacatatctcaaggcc |
48671188 |
T |
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| Q |
434 |
ttaaaagccctgatgaatacatggaactcatgcccaaattcggtcccattagcctcacaaatctcatcgataacaatttcatcaacaacccttccaaaaa |
533 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48671187 |
ataaaagccctgatgaatacatggaactcatagccaaattcggtcccattagcctcacaaatctcatcaataacaatttcatcaacaacccttccaaaaa |
48671088 |
T |
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| Q |
534 |
attagcttgcattatcaataac |
555 |
Q |
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| T |
48671087 |
attagcttgcattatcaataac |
48671066 |
T |
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